update the matrix in the insertions/deletions tab of signatures

mskilab-org / case-report

Genomic case report

BSD 3-Clause "New" or "Revised" License

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update the matrix in the insertions/deletions tab of signatures #15

Closed jrafailov closed 2 days ago

jrafailov commented 1 week ago

An oversight on the backend side was passing forward a table that had 28 types inputted. To reconcile, we would like to adjust the top-level plots and the associated decomposed plots to reflect ID83; that is, 83 distinct data bars that represent each of the channels.

New 83-channel matrices and probabilities are now deposited for NYU clinical samples.

Please update the plot in the same framework as signatures to reflect the new 83 input matrix!

reference below

jrafailov commented 1 week ago

moreover, it would be fantastic if the old functionality for ID28 is not deprecated @xanthopoulakis so that the charts still render for samples we haven't changed...

I think easy way to do this is add some logic to evaluate number of mutation types in the input matrix..? if 28 keep current plot, if 83 update with the new implementation

jrafailov commented 2 days ago

CLOSED!