msmbuilder / msmbuilder-legacy

Legacy release of MSMBuilder
http://msmbuilder.org
GNU General Public License v2.0
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added LigandPMF3D in Extras #431

Open mlawrenz opened 9 years ago

mlawrenz commented 9 years ago

Added a package in Extras for mapping MSM populations to a 3-D free energy PMF that can be viewed in OpenDX format in VMD. Also can estimate free energy differences along the COM distance between a ligand and protein (~binding free energy). Depends on MDTraj. Uses setuptools.