Closed DarrenObbard closed 2 years ago
Hey Darren,
There is no way to prevent the rotation/clipping of the DTRs as of now. I'm now working on a patch that will include an option for this. Basically, the new option will allow labeling of detected DTRs but it won't rotate or clip the sequence.
Hey Darren,
I have added an option --wrap
which you can set to False
in order to get sequences that are not clipped or rotated. You'll have to update Cenote-Taker 2
to v2.1.5 per the instructions. You can set this in any mode, not just -am True
mode.
I hope this helps, and I'm happy to fix any further issues.
Mike
Fantastic! Thank you - this has arrived at exactly the right moment for a project I'm working on!
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Hey Darren,
I have added an option --wrap which you can set to False in order to get sequences that are not clipped or rotated. You'll have to update Cenote-Taker 2 to v2.1.5 per the instructions. You can set this in any mode, not just -am True mode.
I hope this helps, and I'm happy to fix any further issues.
Mike
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Great. I'll close this issue for now.
I want to annotate a sequence that I am confident of. It is a densovirus, with ITRs that have internal repeat structure. I do not want cenote-take to reorientate or edit the sequence before annotating it. However, even when I run "-am True" it (mis)identifies the sequence as circular, and reverse complements it before annotating it.
How do I make it JUST annotate the sequence?