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mummer4 / mummer

Mummer alignment tool
Artistic License 2.0
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promer, could not parse input from 'Query File' #77

Open ATPs opened 6 years ago

ATPs commented 6 years ago

/home/xcao/p/mummer/mummer-4.0.0beta2build/bin/promer -p /home/xcao/w/20180905Junonia_coenia/Junonia2Spodoptera.promer /home/xcao/w/genomes/Spodoptera_litura/GCF_002706865.1_ASM270686v1_genomic.fna /home/xcao/w/genomes/Junonia_coenia/Junonia_coenia_JC_v1.0.scaffolds.fa 1: PREPARING DATA 2,3: RUNNING mummer AND CREATING CLUSTERS 4: FINISHING DATA 000003F ERROR: Could not parse input from 'Query File'. Please check the filename and format, or file a bug report ERROR: postpro returned non-zero

It can run if I use the mummer3.23 version. The query file can be downloaded from 'http://download.lepbase.org/v4/sequence/Junonia_coenia_JC_v1.0.scaffolds.fa.gz'

it seems the same as the issue #55 .

Mamingjie543 commented 1 year ago

I had the same issue, please did you solve it