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mycobactopia-org / MTBseq-nf

MTBSeq made simple and easy using Nextflow and nf-core standard.
https://doi.org/10.5281/zenodo.5498063
MIT License
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[BUG] conda package name #51

Closed Mxrcon closed 2 years ago

Mxrcon commented 2 years ago

hey there :wave:, during my tests using conda i found a small typo on conf/conda

the conda package is named like this bioconda::mtbseq:1.0.3 and nextflow will throw this error: 

    UnavailableInvalidChannel: The channel is not accessible or is invalid.
      channel name: bioconda:
      channel url: https://conda.anaconda.org/bioconda:
      error code: 404

This could be fixed writing the conda package name like this: bioconda:mtbseq:1.0.3 or this bioconda::mtbseq=1.0.3

I'll take some time to implement this change asap on the master branch as it seems to be urgent!

abhi18av commented 2 years ago

@Mxrcon , first time I see bug and enhancement used together 😅

This is definitely a bug.

abhi18av commented 2 years ago

Fixed in master https://github.com/mtb-bioinformatics/mtbseq-nf/commit/b44178a024a625f632e1e3bb73431783765d1a5c