Add QC_REPORTS workflow

mycobactopia-org / MTBseq-nf

MTBSeq made simple and easy using Nextflow and nf-core standard.

https://doi.org/10.5281/zenodo.5498063

MIT License

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Add QC_REPORTS workflow #55

Closed abhi18av closed 2 years ago

abhi18av commented 2 years ago

With recent experience on some projects, we lost quite some time on the analysis when the base genomes weren't even making it through the base QC checks such as size etc.

I think it's worth it to add an optional QC_REPORTS workflow, which takes the initial genomes (before renaming) and then prepares FASTQC and MULTIQC report for the genomes.

The user should be able to

Run only QC_REPORTS workflow
Run QC_REPORTS along with the current setup (default)

abhi18av commented 2 years ago

Hi @Mxrcon , would it be possible for you to take a look into this task?

Mxrcon commented 2 years ago

@abhi18av yes sure, sorry for late answe. I'll give it attention.

abhi18av commented 2 years ago

No problem at all Dávi, hope you had a great vacation! 🏖️

Mxrcon commented 2 years ago

It was really nice! but now it's time to came back to work :sunglasses: