Open aghr opened 1 month ago
I found that outputting the line number of the currently parsed SAM-file line takes much time. Removing just this output gave me a speed-up of parsing the SAM file of min 10 fold.
https://github.com/nabeel-bioinfo/Asite_IP_method/blob/da931e1ad4cb3f042fa6da0135094b84d0ebb743/src/asite_ip_preprocess.py#L112-L113
I found that outputting the line number of the currently parsed SAM-file line takes much time. Removing just this output gave me a speed-up of parsing the SAM file of min 10 fold.
https://github.com/nabeel-bioinfo/Asite_IP_method/blob/da931e1ad4cb3f042fa6da0135094b84d0ebb743/src/asite_ip_preprocess.py#L112-L113