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nanoporetech / dorado

Oxford Nanopore's Basecaller
https://nanoporetech.com/
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Dafult preset lr:hq for Dorado version-v0.6 #797

Closed JMencius closed 4 months ago

JMencius commented 4 months ago

Hi, devlopers of Dorado, I notice the default alignment preset of Minimap2 in Dorado is set to lr:hq in Minimap2Options.h. Specifically, in line93

static const std::string DEFAULT_MM_PRESET{"lr:hq"};

Should it be switch to map-ont if the basecalling data is sequenced with R9 nanopore, since lr:hq is specifically for R10 Q20 data and Dorado support basecalling of R9 data.

Or maybe you have done it.

JMencius commented 4 months ago

Never mind I miss the --mm2-preset option