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nanoporetech / ont-assembly-polish

ONT assembly and Illumina polishing pipeline
Mozilla Public License 2.0
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docker image fails with git clone of ont-assembly-polish #5

Closed biobenkj closed 7 years ago

biobenkj commented 7 years ago

Hi,

Thank you for building this workflow and the associated docker image! When I download and build the docker image for ont-assembly-polish, it fails on the git clone step:

# Clone the ont-assembly-polish project:
ARG CACHEBUST
RUN DUMMY=${CACHEBUST} GIT_SSL_NO_VERIFY=wizardry git clone https://git.oxfordnanolabs.local/bsipos/ont-assembly-polish.git

The error states that git.oxfordnanolabs.local doesn't exist (exit status 128). However, if you adjust to the master branch for ont-assembly-polish, it succeeds.

ARG CACHEBUST
RUN DUMMY=${CACHEBUST} GIT_SSL_NO_VERIFY=wizardry git clone https://github.com/nanoporetech/ont-assembly-polish.git

Should I set up a pull request?

bsipos commented 7 years ago

Thanks for reporting this issue. I pushed out a fix, please try the build again on the HEAD.