Open Salome-Brunon opened 6 months ago
I am very interested by this feature as well!
I already tried to create conda package recipes for pod5
and its dependencies using conda skeleton pypi pod5
or grayskull pypi pod5
(grayskull) but this is not a smooth build neither.
It will be very useful for the community to have at least all python-based Nanopore tools available in conda-forge
or in bioconda
. This will help the tools to be used and spread in standardised workflow manager framework (like nf-core)
Thank you for your help.
I need this as well! :)
Hello, We have developed a post sequencing QC tool for Nanopore data (ToulligQC) and have incorporated the support for the pod5 format in its latest version. However, we are unable to package the new version in bioconda due to the lack of a conda module for pod5. It would be really helpful if a conda pod5 package is created by the nanopore team :)
PS: see below the error I get during the build
Thank you, Salomé