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parameter to decrease stringency of aneuploid classification #25

Closed hartlama closed 3 years ago

hartlama commented 3 years ago

wtIDH_copykat_heatmap

In my heatmap, I see a chunk of cells at the top that appear to have CNA similar to my tumor cells. How can I decrease the stringency of the diploid vs. aneuploid classification so that I can extract these cells as tumor cells? I'm not clear on which parameter I should adjust.

Thanks, Molly

hartlama commented 3 years ago

I increased k from the default 0.1 to 0.15, and this helped.