Workflow 5: Blue Team Implementation of Modules 1-4

ncats / translator-workflows

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Workflow 5: Blue Team Implementation of Modules 1-4 #42

Open karafecho opened 5 years ago

karafecho commented 5 years ago

This issue relates to Blue Team's plans for implementing modules one through four of Workflow 5.

Clinical data source: COHD, ICEES.

karafecho commented 5 years ago

@gglusman : To be discussed with Jen and Hao during our meeting on Wednesday, 1/9.

xu-hao commented 5 years ago

api:

generate_signature(input_dir: String, output_file: String)

The input_dir will contain subdirectories, each subdirectory will be a type such as Medication, within each subdir there are multiple files, each containing records.

jh111 commented 5 years ago

Per our discussion

Directory will contain files in HUSH+ format.
Output file will contain each patient ID noted, with a fingerprint (vector).
Scala, jars

Options to be discussed

Explicit options (if any): number of dimensions in vector, handling of NULL, other

xu-hao commented 5 years ago

@jh111 just to clarify:

Directory will contain files in HUSH+ format.

It is in the type of FHIR format that the HuSH+ data is in.