ncbi / ngs-tools

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CMake Error: The source directory "/home/shutovo/test/ngs-tools" does not exist. #14

Closed jessicarowell closed 3 months ago

jessicarowell commented 3 years ago

While trying to install STAT using the instructions here, I run across a problem running make in these steps:

cd ngs-tools ./configure make -C tools/tax

The error looks like this:

/usr/bin/cmake -H/home/shutovo/test/ngs-tools -B/home/shutovo/test/ngs-tools/tools/tax --check-build-system
CMakeFiles/Makefile.cmake 0
CMake Error: The source directory "/home/shutovo/test/ngs-tools" does not exist.
Specify --help for usage, or press the help button on the CMake GUI.
make: *** [cmake_check_build_system] Error 1
make: Leaving directory `/home/ec2-user/src/ngs-tools/tools/tax' 

It is true; /home/shutovo/test/ngs-tools does not exist. Should it? Can anyone help me figure out how to fix this?

Here's some system info: NAME="Amazon Linux" VERSION="2" and kernel info: Linux 4.14.232-177.418.amzn2.x86_64 #1 SMP Tue Jun 15 20:57:50 UTC 2021

cmake version 2.8.12.2 gcc (GCC) 7.3.1 20180712 (Red Hat 7.3.1-13) Apache Ant(TM) version 1.9.2 compiled on November 13 2017

Thanks!

durbrow commented 3 years ago

Thanks. We are forwarding this to the appropriate individual. Hopefully, this will be fixed quickly.

jessicarowell commented 3 years ago

Hi Kenneth,

Has there been any progress on this? I'd like to try the tool but I cannot try it until I am able to install it. Thanks.

On Tue, Jul 13, 2021 at 10:13 AM Kenneth Durbrow @.***> wrote:

Thanks. We are forwarding this to the appropriate individual. Hopefully, this will be fixed quickly.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/ncbi/ngs-tools/issues/14#issuecomment-879125644, or unsubscribe https://github.com/notifications/unsubscribe-auth/AGBWOQW5BV5XKDWVYLQXPWTTXRC2LANCNFSM5ADRQRJA .

-- Jessica Rowell

klymenko commented 6 months ago

Instructions were updated. Please try again.