Describe the bug
A clear and concise description of what the bug is.
To Reproduce
If you are having trouble with your genome, please ensure that you can run the pipeline with one of our test genomes first. If your installation works fine with the sample input, please tell us if you are willing and able to share your genome with us, if asked.
Expected behavior
A clear and concise description of what you expected to happen.
Software versions (please complete the following information):
OS: [e.g. CentOS 7, Windows 10, etc.]
pgap.py --version, or docker image version.
Docker (or other container runner) version. [e.g. docker --version]
Log Files
Please rerun pgap.py with the --debug flag and attach an archive (e.g. zip or tarball) of the logs in the directory: debug/tmp-outdir/*/*.log.
Additional context
Add any other context about the problem here.
Describe the bug A clear and concise description of what the bug is.
To Reproduce If you are having trouble with your genome, please ensure that you can run the pipeline with one of our test genomes first. If your installation works fine with the sample input, please tell us if you are willing and able to share your genome with us, if asked.
Expected behavior A clear and concise description of what you expected to happen.
Software versions (please complete the following information):
docker --version
]Log Files Please rerun pgap.py with the
--debug
flag and attach an archive (e.g. zip or tarball) of the logs in the directory:debug/tmp-outdir/*/*.log
.Additional context Add any other context about the problem here.