Open alexskr opened 2 years ago
The first and second submissions for PESONT ontology are identical, so I removed 2nd submission and re-processed it. This fixed metrics for the class count.
this problem resurfaces when re-processing submissions:
E, ERROR -- : Failed, exception: ArgumentError: comparison of String with -1 failed
gems/ontologies_linked_data-048087406b7e/lib/ontologies_linked_data/services/submission_process/operations/submission_rdf_generator.rb:70:in `>'
perhaps adding .to_i
to cout would be a reasonable approach?
the triple store contains quoted/string metrics class counts values for a few submissions.
<http://data.bioontology.org/ontologies/ISO19115CI/submissions/1/metrics> <http://data.bioontology.org/metadata/classes> "23" ;
<http://data.bioontology.org/ontologies/GPML/submissions/66/metrics> <http://data.bioontology.org/metadata/classes> "43" ;
<http://data.bioontology.org/ontologies/ECO/submissions/60/metrics> <http://data.bioontology.org/metadata/classes> "929" ;
<http://data.bioontology.org/ontologies/BMO/submissions/1/metrics> <http://data.bioontology.org/metadata/classes> "170" ;
<http://data.bioontology.org/ontologies/XCO/submissions/139/metrics> <http://data.bioontology.org/metadata/classes> "1030" ;
We are getting
ArgumentError: comparison of String with 0 failed
when accessing/ontologies/PESONT/classes
culprit is:
https://github.com/ncbo/ontologies_api/blob/3728faba77cf227f925a274287a70a7377dcc1d4/controllers/classes_controller.rb#L10 adding
.to_i
tocls_count
solves the 500 error but I think the root case of the problem is probably elsewhere.Looking at the metrics we can see that class count metrics is set to a string instead of an integer: