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ncborcherding / escape

Easy single cell analysis platform for enrichment
https://www.borch.dev/uploads/screpertoire/articles/running_escape
MIT License
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Results of getSignificance with ANOVA #129

Closed hwi1208 closed 4 weeks ago

hwi1208 commented 4 weeks ago

The results showed pairwise comparisons among groups, so is it automatically calculated? If so, what comparisons are used in this analysis?

ncborcherding commented 4 weeks ago

@hwi1208,

getSignificance() using the ANOVA will automatically calculate the individual comparisons using the TukeyHSD() function in R. I should mention that we have deprecated getSignificance() in the newer versions of escape as there are a number of open source methods with improved statistical rigor.

Thanks, Nick