issues
search
ncsa
/
NEAT
NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
Other
37
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Feature/modularization
#69
joshfactorial
closed
1 year ago
0
Inserting New variants using VCF file not inserting the SNP/INDELS
#68
vinaydeep26
closed
1 year ago
4
IndexError: list index out of range
#67
mattbird567
closed
1 year ago
1
Specification of variant allele frequency for inserted mutation ?
#66
yvanw
closed
1 month ago
4
Quality scores not mimicking real data
#65
jlmarlo
closed
3 months ago
13
Raises error for masked data.
#64
keshav-gandhi
closed
1 year ago
0
Feature/modularization
#63
joshfactorial
closed
1 year ago
0
Insertion of CNVs
#62
lukatop
closed
1 month ago
5
Fix fpfn issues
#61
blajoie
closed
1 year ago
0
Update readme
#60
keshav-gandhi
closed
2 years ago
0
Elembio improve readid + fix mut rate
#59
blajoie
closed
2 years ago
0
Add support for multi-allelic variants within input VCF
#58
blajoie
closed
1 year ago
6
fix qual rescale
#57
ajaltomare
closed
2 years ago
0
Incorporate pybedtools into compute_gc + improvements
#56
joshfactorial
closed
1 month ago
0
Unable to simulate HOM (1/1) variants? Reads/VCF only show HET (0/1)
#55
blajoie
closed
2 years ago
5
Coverage not working as intended
#54
PratyushTandale
closed
1 month ago
3
Prune files
#53
joshfactorial
closed
2 years ago
0
Branch cleanup
#52
joshfactorial
closed
2 years ago
0
Number of variants generated from mutational model lower than expected
#51
aldosr
closed
3 months ago
3
updates to compute_fraglen for more accurate fragment length distribu…
#50
joshfactorial
closed
2 years ago
0
IndexError when generating artificial tumor reads
#49
aldosr
closed
1 month ago
5
WES Style Data - Variant Inserts Missing with `-v` option on.
#48
MikeWLloyd
closed
2 years ago
15
Yash work
#47
YashWasnik7
closed
2 years ago
0
MutableSeq Object error
#46
ChrisFearn97
closed
2 years ago
6
Running on ChrM only
#45
MikeWLloyd
closed
2 years ago
6
Pickle error
#44
MikeWLloyd
closed
2 years ago
3
Fixes to the Poisson distribution that was sampling for number of mut…
#43
joshfactorial
closed
2 years ago
0
removing debug print statements
#42
jkalleberg
closed
2 years ago
0
Resolves #39
#41
jkalleberg
closed
2 years ago
0
This is test
#40
joshfactorial
closed
2 years ago
0
Error with utilities/vcf_compare_OLD.py
#39
jkalleberg
closed
2 years ago
2
Number of sites in VCF does not correspond to -M setting?
#38
gwct
closed
2 years ago
18
Feature/parallelization
#37
joshfactorial
closed
2 years ago
0
Potential Bug in compute_fraglen.py - Incorrect fraglength distribution
#36
mrmilhaven
closed
2 years ago
2
Ceci n'est pas une bogue
#35
robkooper
closed
2 years ago
0
Test Ticket
#34
christinafliege
closed
2 years ago
1
Incorporating utilities into NEAT in a streamlined way
#33
joshfactorial
closed
1 month ago
0
Utilizing AI to model exsting data
#32
joshfactorial
closed
1 month ago
1
Fasta-only mode
#31
joshfactorial
closed
1 year ago
0
test
#30
joshfactorial
closed
2 years ago
0
Update package versions
#29
joshfactorial
closed
1 year ago
0
Error simulating reads using input VCF for human Y chromosome
#28
angelat1020
closed
2 years ago
6
Refactor main code
#27
joshfactorial
closed
1 year ago
0
Bypass Bam Functionality when not Needed
#26
joshfactorial
closed
1 month ago
2
Overhaul probabilities
#25
joshfactorial
closed
1 year ago
0
Paired reads orientation generation behavior
#24
MeatKatlet
closed
2 years ago
0
Paired reads orientation generation behavior
#23
MeatKatlet
closed
2 years ago
0
Develop
#22
joshfactorial
closed
2 years ago
0
CI/CD - Test for Utilities
#21
sushma-4
closed
2 years ago
1
Support BAM index file
#20
sushma-4
closed
2 years ago
0
Previous
Next