ndexbio ndex2-client issues

ndexbio / ndex2-client

NDEx2 Client

BSD 3-Clause "New" or "Revised" License

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issues

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Adding Copy Icon and Functionality to Code Block Template

#99 devarsh10 closed 4 months ago
3
Fix typo in generate_metadata()

#98 cthoyt closed 1 year ago
1
Syntax fix

#97 hrshdhgd closed 1 year ago
1
ndex2.create_nice_cx_from_networkx fails with numpy 1.24.X

#96 coleslaw481 closed 1 year ago
1
Update README.rst

#95 rpillich closed 1 year ago
0
ndex2 on conda

#94 MOohTus closed 1 year ago
4
Pandas to Nice_cx should allow to choose datatype and delimiter for node/edge attributes

#93 rpillich opened 1 year ago
1
import ndex2 outputs warnings in python3.9

#92 coleslaw481 closed 8 months ago
2
Improve networkx conversion

#91 coleslaw481 closed 5 months ago
1
Empty list attributes are treated as strings when converting networkx to NiceCXNetwork

#90 coleslaw481 closed 2 years ago
1
apply_template method under NiceCXNetwork does NOT clear previous styles

#89 coleslaw481 closed 2 years ago
1
@context is lost either in loading of CX into NiceCXNetwork or during save to NDEx server

#88 coleslaw481 closed 2 years ago
1
Add CX2 endpoints to ndex2.client.Ndex2()`

#87 coleslaw481 closed 2 years ago
1
Question: is uuid unique to each version?

#86 RemyLau closed 2 years ago
2
import of ndex2 takes too long to run

#85 coleslaw481 closed 2 years ago
1
Converting NiceCXNetwork to networkx and back does not handle node name consistently

#84 coleslaw481 closed 2 years ago
1
Boolean attributes are treated as integers when converting networkx to NiceCXNetwork

#83 coleslaw481 closed 2 years ago
1
NiceCXNetwork.update_to() documentation says returning empty string instead of network URL

#82 coleslaw481 closed 3 years ago
3
Switch NiceCXNetwork.update_to() to named parameters and add client parameter

#81 coleslaw481 closed 3 years ago
1
Switch NiceCXNetwork.upload_to() to named parameters and add client parameter

#80 coleslaw481 closed 3 years ago
1
NiceCXNetwork.to_networkx() fails with ValueError on networkx version 2.5.1

#79 coleslaw481 closed 3 years ago
1
get_network_ids_for_user not returning expected network_ids

#78 ariutta closed 3 years ago
4
set_network_properties -> 500 Server Error

#77 ariutta closed 3 years ago
4
Enum34 causing problems in Python 3.4+

#76 bgyori closed 3 years ago
4
Remove ndex2.client.Ndex2.search_networks_by_property_filter() since it always raises an exception

#75 coleslaw481 opened 4 years ago
3
Drop support for v1 of NDEx

#74 coleslaw481 closed 4 years ago
1
Move ndex2cx.nice_cx_builder.py to ndex2 and remove ndex2cx

#73 coleslaw481 closed 4 years ago
1
Remove ndex2.niceCXInterface.py

#72 coleslaw481 closed 4 years ago
1
Ndex2 changes host if 'localhost' in host name

#71 coleslaw481 closed 4 years ago
1
Need safe wrapper for set_network_properties

#70 coleslaw481 closed 3 years ago
1
Remove forced setting of localhost url if localhost in host name in Ndex2 client constructor

#69 coleslaw481 closed 4 years ago
1
Remove deprecated methods from NiceCXNetwork

#68 coleslaw481 closed 4 years ago
1
In NiceCXNetwork remove get_edge_attribute_objects() since it always raises Warning (which is incorrect behavior anyways)

#67 coleslaw481 closed 4 years ago
1
Update client to use SSL to connect to REST service by default

#66 coleslaw481 closed 4 years ago
1
Avoid using `type` as variable name

#65 coleslaw481 closed 4 years ago
1
NiceCXNetwork.set_context should add data to @context NetworkAttribute

#64 coleslaw481 closed 5 months ago
1
Convert all print calls to use logging framework

#63 coleslaw481 closed 4 years ago
1
Add manifest and include required files

#62 bgyori closed 4 years ago
2
Add get_networksets() method

#61 coleslaw481 closed 3 years ago
3
NiceCXNetwork.create_node() and create_edge overwrites existing nodes/edges

#60 coleslaw481 closed 3 years ago
1
add method to Ndex2 client to allow deletion of networksets

#59 coleslaw481 closed 4 years ago
1
Update conf.py

#58 jeff15610 closed 3 years ago
1
Citation and supports in NiceCXNetwork

#57 bgyori closed 4 years ago
3
Update client.py

#56 jeff15610 closed 1 year ago
0
Avoid using `id` as variable name

#55 zachary822 closed 4 years ago
4
Update documentation for ndex2client.Ndex2.update_network_profile() to let caller know that network must be properly loaded before use

#54 coleslaw481 closed 4 years ago
1
Error in translation of data type for node and edge attributes when going to and from networkx

#53 coleslaw481 closed 5 months ago
1
Add unit tests for all of the Ndex2 client class

#52 coleslaw481 opened 5 years ago
0
ndex2.create_nice_cx_from_networkx load network attributes from graph

#51 coleslaw481 closed 5 months ago
1
In NiceCXNetwork.add_network_attribute() type not properly reset when adding duplicate attribute

#50 coleslaw481 closed 4 years ago
1