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nedialkova-lab
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mim-tRNAseq
Modification-induced misincorporation tRNA sequencing
GNU General Public License v3.0
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problem with Final deconvolution and filtering
#74
zhouuplus
opened
1 month ago
2
Interpretation of the "proportion" Column in mismatchTable.csv
#73
Xinkai-Wu
closed
2 months ago
2
how does mim-tRNAseq handle partially mapped tRNA sequence?
#72
lkong888
opened
2 months ago
1
Fail to read the header from unpaired_mult files
#71
Xinkai-Wu
opened
2 months ago
1
Formatting of tRNA FASTA reference file
#70
Phontia
closed
1 month ago
9
Error During Final Deconvolution with Clustering Enabled for E. coli tRNA Analysis in MimSeq
#69
AteeshaNegi
closed
3 months ago
2
Installation of mimseq package
#68
Phontia
closed
3 months ago
3
GMAP version 2017-11-15
#67
Futa0908
closed
1 month ago
4
GSNAP Ver. 2019-02-26 Installation issues
#66
Futa0908
closed
12 months ago
2
Interpretation of output files
#65
pawanchk
opened
12 months ago
2
modifications outdated?
#64
piechottam
closed
1 year ago
2
fix: open local modifications file in read-only
#63
kelly-sovacool
closed
1 year ago
0
Error in differential expression analysis
#62
kelly-sovacool
closed
1 year ago
2
cmalign dependency when installing from source
#61
kelly-sovacool
closed
1 year ago
4
ci: create simple E2E test for github actions
#60
kelly-sovacool
closed
10 months ago
23
Incomplete refactor in tRNAtools
#59
kelly-sovacool
closed
1 year ago
1
Set up E2E test with continuous integration
#58
kelly-sovacool
closed
10 months ago
3
fix: remove unused modomics variable
#57
kelly-sovacool
closed
1 year ago
1
bug: out_dir is a boolean in modsToSNPIndex()
#56
kelly-sovacool
closed
1 year ago
0
fix: require requests
#55
kelly-sovacool
closed
1 year ago
1
fix: remove & ignore build artifacts
#54
kelly-sovacool
closed
1 year ago
1
Merge pull request #52 from nedialkova-lab/revert-51-revert-50-read-m…
#53
drewjbeh
closed
1 year ago
0
Revert "Revert "fix: open modomics file in read-only mode""
#52
drewjbeh
closed
1 year ago
0
Revert "fix: open modomics file in read-only mode"
#51
drewjbeh
closed
1 year ago
0
fix: open modomics file in read-only mode
#50
kelly-sovacool
closed
1 year ago
2
Installation errors
#49
pawanchk
closed
1 year ago
18
Problems about match to Modomics dataset
#48
Yanhui-1008
closed
1 year ago
12
Error in the Alignment step
#47
marctormo
closed
1 year ago
2
Issue after update
#46
joegeorgeson
closed
1 year ago
11
Error occur when"Parsing Modomics JSON data"
#45
wuxujia-dev
closed
11 months ago
15
error when install mimseq through mamba: ModuleNotFoundError: No module named 'conda._vendor.auxlib'
#44
AiweiWu
closed
1 year ago
1
A potential problem when working on self-made tRNA fasta
#43
ruixuan-zhang
closed
1 year ago
4
multiprocessing.pool.RemoteTraceback error
#42
huLi2023
closed
1 year ago
5
KeyError: "sequence" during Determining non-deconvoluted clusters due to insufficient coverage at mismatches
#41
ruixuan-zhang
closed
1 year ago
8
Dockerized mim-tRNAseq
#40
joegeorgeson
closed
1 year ago
10
Add documentation of SLAC algorithm
#39
hexavier
closed
1 year ago
1
Incorporate crosstalks analysis into mim-tRNAseq
#38
hexavier
closed
1 year ago
2
subprocess.CalledProcessError
#37
Squirrelity
closed
1 year ago
7
Ts split mt plastid
#36
TomSmithCGAT
closed
2 years ago
1
Isodecoder column in counts incorrect
#35
TomSmithCGAT
closed
2 years ago
3
KeyError
#34
kopardev
closed
2 years ago
2
Error
#33
kopardev
closed
2 years ago
7
Docker?
#32
kopardev
closed
2 years ago
2
usearch vs vsearch
#31
TomSmithCGAT
closed
1 year ago
11
non-zero exist status 9 error
#30
nepena
closed
2 years ago
2
Run it for other species
#29
AnneHoffmann
closed
2 years ago
3
Questions about Spikein
#28
AngLiRNA
closed
2 years ago
1
CalledProcessError: Command '['gsnap'.....] returned non-zero exit status 9.
#27
AngLiRNA
closed
2 years ago
2
Conda Installation - R version problem
#26
cyken6621
closed
2 years ago
2
memory problems fixed by sorting before coverage check
#25
jabard89
closed
2 years ago
1
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