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neherlab / treetime

Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
MIT License
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MissingDataError: ERROR: Cannot read metadata: #274

Open aliciapm7 opened 3 months ago

aliciapm7 commented 3 months ago

Hi. Hope you're all ok.

I'm using treetime on google colaboratory and installed just like the tutorial. I've tried de .tsv and .csv file but it ends the same way everytime: "MissingDataError: ERROR: Cannot read metadata: need at least one column that contains the taxon labels. Looking for the first column that contains 'name', 'strain', or 'accession' in the header"

thats the code i'm using (python 3): !treetime --tree /content/arvore.txt --aln /content/genomacompleto.fas --dates /content/Nomedata1OK.csv

here is an exemple of my .tsv file's header image

and my .csv image

Please, someone help me. I don't know what to do anymore

rneher commented 1 month ago

this should work Any chance you can provide the input files to investigate?

aliciapm7 commented 1 month ago

sure. https://ftcedu-my.sharepoint.com/:f:/g/personal/222291087_aluno_uniftc_edu_br/Et5T-ZQnAnVMm8xTzhEX03IBWCd31iHkF2Q4liw92QEAQg?email=aliciamorais100%40outlook.com&e=pG0nYh

De: Richard Neher @.> Enviado: sábado, 10 de agosto de 2024 22:49 Para: neherlab/treetime @.> Cc: aliciapm7 @.>; Author @.> Assunto: Re: [neherlab/treetime] MissingDataError: ERROR: Cannot read metadata: (Issue #274)

this should work Any chance you can provide the input files to investigate?

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