Claim 1: The 64,000 um3 box imaged at high resolution had roughly 13.7 million cell profiles in its 1850 sections.

[wrgr]

Do Something:

• [ ] Download volume at scale 3
• [ ] Do connected components on each slice
• [ ] Sum unique labels per slice

Potential Improvements:

• [ ] Ensure that branched objects with the same label are counted twice
• [ ] Resolve which masking to use for this claim
• [ ] Use only dense cylinder and extrapolate to full volume
• [ ] Correct for relabeling cell parts (e.g., spines to dendrites)
• [ ] Try to understand discrepancy with paper number

[jovo]

we get different answers than they say we should. can we explain the discrepancy discrepancy? shall we ask bobby?

[wrgr]

Sure! We need a good strategy (batch?) to make this less overwhelming, perhaps.

[jovo]

sure, let's ask when we are done.

[jovo]

in any case, i vote we close this issue, and maybe make a new issue with all claim 1 outstanding thoughts (or 1 for all claims?)

[wrgr]

obe