Percentage overlap: bar plot

[bschilder]

For input in bed6 format (without the additional 4 columns), only one color is visible in the provided example after excluding the last 4 columns. Reference itself may be excluded.

This may be do to a hard-coded fill scale somewhere. Could you investigate @serachoi1230 ?

[bschilder]

@serachoi1230 can you tell me which function you altered to do this?

I noticed the plot you included in the reviewer comments reply is rather different from the one EpiCompare is generating by default:

In reviewer comments reply

In report

Am I looking at the wrong plot, or does the plot in the comments just need to be updated?

[bschilder]

Ok, so this comes from the fact that there's a difference between how the BED formats are handled.

I've also modified the code so that the adjusted p-values are rounded to the nearest 4 significant digits in either case.

I've also made both versions interactive, and conditionally add the labels to avoid the warning from plotly about not being able to transfer over these kinds of geoms:

[bschilder]

I've also renamed p.adjust --> q-value, and flipped the x/y axes to be more consistent across the plots generated for different BED formats.