search

nextstrain / cli

The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
https://docs.nextstrain.org/projects/cli/
MIT License
27 stars 20 forks source link

Bump micromamba to support new nextstrain/conda-base package #429

Open joverlee521 opened 1 month ago

joverlee521 commented 1 month ago

Context

Full context in https://github.com/nextstrain/conda-base/issues/105

Summary: If nextstrain/conda-base includes package that specifies x86_64-microarch-level, then installation will fail due to bug in mamba, which has been resolved in v1.5.10 and v2.0.0..

So we have the option to bump to 1.5.10 or 2.0.0.

joverlee521 commented 1 month ago

From mamba's README:

Only mamba and micromamba 2.0 and later are supported and are actively developed.

The 1.x branch is only maintained for addressing security issues such as CVEs.

So if we have to bump the version, might as well bump to v2.

joverlee521 commented 1 month ago

Major changes listed in https://mamba.readthedocs.io/en/latest/developer_zone/changes-2.0.html do not seem to affect us.

joverlee521 commented 1 month ago

Skimmed over CHANGELOG from 1.5.1 to 2.1.0 and nothing jumped out to me.

Will make PR to bump micromamba version to 2.1.0