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nextstrain / conda-base

Conda package build for nextstrain-base
https://anaconda.org/Nextstrain/nextstrain-base
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CI build failure / macOS 12 / libexpat #88

Closed jameshadfield closed 1 month ago

jameshadfield commented 1 month ago

Current Behavior

A recent (10 hours ago, at time of writing) CI run passed

A CI run from ~5 min ago failed

Preparing environment for nextstrain-base

Finalizing run for nextstrain-base
Reloading output folder: /Users/runner/work/conda-base/conda-base/build/src
dyld[4008]: Library not loaded: '@rpath/libsolv.1.dylib'
  Referenced from: '/Users/runner/micromamba/pkgs/libmamba-1.5.8-ha449628_0/lib/libmamba.2.0.0.dylib'
libexpat-2.6.2-h73e2aa4_0.conda extraction failed
  Reason: tried: '/Users/runner/micromamba/pkgs/libmamba-1.5.8-ha449628_0/lib/libsolv.1.dylib' (no such file), '/Users/runner/micromamba/pkgs/libmamba-1.5.8-ha449628_0/bin/../lib/libsolv.1.dylib' (no such file), '/Users/runner/micromamba/pkgs/libmamba-1.5.8-ha449628_0/bin/../lib/libsolv.1.dylib' (no such file), '/usr/local/lib/libsolv.1.dylib' (no such file), '/usr/lib/libsolv.1.dylib' (no such file)
error    libmamba Error opening for reading "/Users/runner/work/conda-base/conda-base/.dev-env/pkgs/libexpat-2.6.2-h73e2aa4_0/info/index.json": No such file or directory
error    libmamba Error when extracting package: [json.exception.parse_error.101] parse error at line 1, column 1: attempting to parse an empty input; check that your input string or stream contains the expected JSON

[Traceback...]

RuntimeError: Found incorrect download: libexpat. Aborting

I'll circle back tomorrow and review the situation.

jameshadfield commented 1 month ago

A re-run of the failed CI ~12 hours later passed