Closed mapo9 closed 1 week ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit cfa4f73
+| ✅ 274 tests passed |+
#| ❔ 7 tests were ignored |#
!| ❗ 2 tests had warnings |!
Hi I incorporated the changes we discussed. Among others, I updated the nf-core/trust4 module which now fits our use-case and switched to the nf-core module in airrflow as well.
This PR allows to run airrflow from unselected RNA-seq fastq files. This is done by using the TRUST4 tool.
PR checklist
nf-core lint
).nf-test test main.nf.test -profile test,docker
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).