nf-core deepmodeloptim issues

nf-core / deepmodeloptim

Stochastic Testing and Input Manipulation for Unbiased Learning Systems

https://nf-co.re/deepmodeloptim

MIT License

23 stars 9 forks source link

issues

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My version of logo update

#209 mashehu closed 2 weeks ago
0
update logo

#208 suzannejin closed 2 weeks ago
0
add logo and update readme

#207 suzannejin closed 2 weeks ago
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Add metromap to README

#206 itrujnara closed 3 weeks ago
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[enhancement] do .yaml config parsing and puting into channels in groovy instead of python

#205 mathysgrapotte opened 3 weeks ago
0
Move datasets into nf-core/testdata

#204 luisas closed 3 weeks ago
1
Add meta to the pipeline

#203 luisas opened 3 weeks ago
0
Freeze the stimulus container to seqera wave

#202 mathysgrapotte opened 3 weeks ago
0
Turn torch_tune into an nf-core module

#201 JoseEspinosa opened 1 month ago
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Turn stimulus_transform_csv into an nf-core module

#200 JoseEspinosa opened 1 month ago
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Turn stimulus_split_csv into an nf-core module

#199 JoseEspinosa opened 1 month ago
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Turn stimulus_analysis_default into an nf-core module

#198 JoseEspinosa opened 1 month ago
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Turn check_torch_model into an nf-core module

#197 JoseEspinosa opened 1 month ago
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[future][discussion] deal with data located in files

#196 mathysgrapotte opened 1 month ago
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[future][discussion] how to incorporate external modules ?

#195 mathysgrapotte opened 1 month ago
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Turn the following modules into nf-core modules

#194 mathysgrapotte opened 1 month ago
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Fix nf-test after nf-core migration

#193 JoseEspinosa opened 1 month ago
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Adapt subworkflow to the nf-core structure

#192 JoseEspinosa opened 1 month ago
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Adapt modules to the nf-core structure

#191 JoseEspinosa closed 1 month ago
1
Adapt components to the nf-core structure

#190 JoseEspinosa opened 1 month ago
0
Collect local module versions

#189 JoseEspinosa closed 1 month ago
1
Update test_full.config

#188 JoseEspinosa opened 1 month ago
0
Add a real test data set for full testing

#187 JoseEspinosa opened 1 month ago
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Implement nf-core full tests

#186 JoseEspinosa opened 1 month ago
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Reconciliate the previous readme with nf-core one

#185 JoseEspinosa opened 1 month ago
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Move test data to the nf-core test dataset repo

#184 JoseEspinosa opened 1 month ago
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nf-core template merge

#183 JoseEspinosa closed 1 month ago
1
Add stimulus py integration

#182 mathysgrapotte closed 1 month ago
0
retraining models with stimulus with pulling from checkpoints (all models degrade overtime)

#181 mathysgrapotte closed 1 month ago
0
[feat] create a nf-core pipeline config for the pipeline

#180 JoseEspinosa opened 1 month ago
0
[feat] outsource python package to a different repo ready for pip deployment

#179 mathysgrapotte closed 1 month ago
1
[feat] parallelize predict wrapper

#178 suzannejin closed 1 month ago
3
[feat] custom json can be used even split = None

#177 suzannejin closed 2 months ago
0
[feat] experiment conf json "custom" section should provide a slot "name" for the naming of each configuration

#176 suzannejin closed 1 month ago
1
[feat] analysis default should provide figures about the prediction values

#175 suzannejin closed 1 month ago
1
Readme

#174 mathysgrapotte closed 2 months ago
0
[bug] multiprocessing doesn't work in ikernels

#173 mathysgrapotte closed 2 months ago
1
Validate tune conf

#172 alessiovignoli closed 3 months ago
0
[feat] add a way to assess the impact of different initial weights on the learning

#171 suzannejin closed 1 month ago
1
[feat] add initial_weights

#170 suzannejin closed 3 months ago
0
[feat] allow yaml file to provide single values

#169 suzannejin closed 3 months ago
0
add crg slurm config profile

#168 suzannejin closed 3 months ago
0
[feat] python module to validate the tune config fields.

#167 alessiovignoli closed 1 month ago
2
Nf test tune

#166 alessiovignoli closed 4 months ago
0
[feat] GaussianChunk to nf-test handle_data.nf.test

#165 alessiovignoli closed 1 month ago
1
[feat] add a script for predicting the predictions given the model, the data, and the tune output

#164 suzannejin closed 4 months ago
0
[feat] adding a transform class for chunking input data from the middle of sequences in a gaussian manner

#163 mathysgrapotte closed 4 months ago
0
[bug] avoid competing resources between multiprocessing.pool and ray tune

#162 suzannejin closed 4 months ago
0
[feat] add a custom function <sampint> to yaml_model_schemal to sample x numbers from a range of values

#161 suzannejin closed 4 months ago
0
[feat] custom function for tune to sample x number from space

#160 suzannejin closed 4 months ago
0