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nf-core / differentialabundance

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
https://nf-co.re/differentialabundance
MIT License
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GSEA html reports have broken links to png and TSV files #260

Closed vmkalbskopf closed 5 months ago

vmkalbskopf commented 5 months ago

Description of the bug

None of the GSEA generated html reports render png images. The html source indicates that the images should be in the same directory has the html files. But the images are placed elsewhere. The same is true for the TSV files linked in the reports.

Command used and terminal output

No response

Relevant files

example_broken_html_files.zip

System information

Tested on current dev version

GSEA_GSEA:
  gsea: 4.3.2
TABULAR_TO_GSEA_CHIP:
  bash: 4.2.25 3
Workflow:
    nf-core/differentialabundance: v1.5.0
    Nextflow: 23.10.1
pinin4fjords commented 5 months ago

Fixed in https://github.com/nf-core/differentialabundance/pull/265