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nf-core
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quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
https://nf-co.re/quantms
MIT License
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proteomicsLFQ removes features with few measurements from MSstats input
#102
Roman-Si
closed
1 year ago
2
Important! Template update for nf-core/tools v2.8
#101
nf-core-bot
closed
1 year ago
1
post 1.1.1 release workup
#100
fabianegli
closed
1 year ago
1
add release date
#99
fabianegli
closed
1 year ago
5
Post-release 1.1.1
#98
fabianegli
closed
7 months ago
1
Prepare for release 1.1.1
#97
fabianegli
closed
1 year ago
1
Prepare for release 1.1.1, Changelog changed
#96
ypriverol
closed
1 year ago
2
Release 1.1.1
#95
ypriverol
closed
1 year ago
4
update doi
#94
ypriverol
closed
1 year ago
2
Update container logic
#93
sminot
closed
1 year ago
6
[Doc] mztab columns
#92
jpfeuffer
closed
1 year ago
4
[FEATURE] update dev profile
#91
jpfeuffer
closed
1 year ago
6
Add the Zenodo Id properly
#90
ypriverol
closed
1 year ago
0
[Feature] micromambaci
#89
jpfeuffer
closed
1 year ago
21
Upgrade Comet to latest 20223010 version
#88
ypriverol
closed
1 year ago
4
Upgrade to OpenMS 1.9.1 with Comet 2023
#87
ypriverol
closed
1 year ago
2
Prepare for future development
#86
fabianegli
closed
1 year ago
1
Add release date and Zenodo DOI for version 1.1.0
#85
ypriverol
closed
1 year ago
1
Add release date and Zenodo DOI for version 1.1.0
#84
fabianegli
closed
1 year ago
1
Post release updates
#83
fabianegli
closed
1 year ago
0
consensusID remove process_medium
#82
ypriverol
closed
1 year ago
1
Dev
#81
ypriverol
closed
1 year ago
1
Prepare for release
#80
fabianegli
closed
1 year ago
1
changes for link module preprocess_expdesign.nf
#79
ypriverol
closed
1 year ago
2
small format changes
#78
ypriverol
closed
1 year ago
1
More changes for review 1.1 release
#77
ypriverol
closed
1 year ago
2
Contribution to v1 1
#76
fabianegli
closed
1 year ago
1
Major changes to fix recomendations in #48
#75
ypriverol
closed
1 year ago
1
small fixing for review PR #48
#74
ypriverol
closed
1 year ago
1
fix check for GITHUB_HEAD_REF
#73
fabianegli
closed
1 year ago
2
Major PR with integration changes.
#72
ypriverol
closed
1 year ago
1
Completely overhaul conda handling
#71
jpfeuffer
closed
1 year ago
1
Merging-template
#70
jpfeuffer
closed
1 year ago
4
Sync dev
#69
jpfeuffer
closed
1 year ago
2
The run-command needs to be updated in documentation
#68
charmoniumQ
closed
1 year ago
1
Singularity image not available
#67
adomingues
closed
1 year ago
1
Important! Template update for nf-core/tools v2.7.2
#66
nf-core-bot
closed
1 year ago
0
Important! Template update for nf-core/tools v2.7.1
#65
nf-core-bot
closed
1 year ago
1
Allow passing through `raw` files if DIA is used
#64
jpfeuffer
closed
1 year ago
8
Move most modules from local into nf-core
#63
jpfeuffer
closed
7 months ago
7
`DIANNCONVERT` crashes when `dia_params` has empty parameters
#62
harper357
closed
2 years ago
2
Do not use nextflow readLine() since it downloads files on cluster head nodes
#61
harper357
closed
7 months ago
3
Important! Template update for nf-core/tools v2.6
#60
nf-core-bot
closed
2 years ago
0
Tetsrun
#59
fabianegli
closed
2 years ago
1
do not hardcode sdrf-pipelines version
#58
fabianegli
closed
1 year ago
2
Reproduce conda channel failure again
#57
fabianegli
closed
2 years ago
2
reproduce conda channel setup failure
#56
fabianegli
closed
2 years ago
1
Dev
#55
fabianegli
closed
2 years ago
1
[Fix] links due to server change
#54
jpfeuffer
closed
2 years ago
2
Important! Template update for nf-core/tools v2.5.1
#53
nf-core-bot
closed
2 years ago
9
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