Allow multiple unrelated cases/families in samplesheet.csv

nf-core / raredisease

Call and score variants from WGS/WES of rare disease patients.

https://nf-co.re/raredisease

MIT License

90 stars 34 forks source link

Allow multiple unrelated cases/families in samplesheet.csv #604

Open sitems opened 3 months ago

sitems commented 3 months ago

Description of feature

I have data consisting of several unrelated trios and several individuals. Is it possible to run the pipeline with just one samplesheet (where cases have different case_id)? So, for example, each case/family would have separate output snv.vcf.gz.

ramprasadn commented 2 months ago

Currently, the pipeline does not support samplesheets that include unrelated individuals @sitems. We have several features in our backlog that we're working to complete. Once we finish those, we will certainly take a closer look at this issue.