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nf-core / taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
https://nf-co.re/taxprofiler
MIT License
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Documentation: Broken Links in "Full database sheet" Section #418

Closed lennijusten closed 1 year ago

lennijusten commented 1 year ago

Description of the bug

Description

I encountered an issue with the documentation on the "Full database sheet" section of the TaxProfiler documentation (v1.1.2). The links intended to guide users to tutorials for generating custom databases for various tools are not functioning correctly.

Issue Details

The tool names in the list (e.g., Kraken2, KMCP, MetaPhlAn, Kaiju, Bracken, etc.) are hyperlinked to their respective tutorial pages. However, clicking on any of these links leads to a browser error stating: "This page isn’t working nf-co.re redirected you too many times. Try deleting your cookies. ERR_TOO_MANY_REDIRECTS".

I have attempted to resolve this by clearing cookies and using different browsers (Safari and Chrome), but the issue persists. This suggests to me that the problem is with the website or the link structure.

Command used and terminal output

No response

Relevant files

No response

System information

No response

jfy133 commented 1 year ago

@mashehu any suggestion? Could we have added the links 'badly' in the markdown or is it a website backend thing?

jfy133 commented 1 year ago

I can confirm the behaviour happens on my end too, specifically this links at the bottom of this section:

https://nf-co.re/taxprofiler/1.1.2/docs/usage#full-database-sheet

mashehu commented 1 year ago

Fixed!

jfy133 commented 1 year ago

Thanks!