overlapping_objects_counting

Counting overlapping objects - colony formation assay CFA

Workflow:

• Color deconvolution H and E (ImageJ macro - update soon)

• Stardist segmentation

Demo:

Acknowledgements:

1. Landini et al, Color deconvolution plugins:

https://github.com/landinig/IJ-Colour_Deconvolution2

https://github.com/landinig/IJ-Colour_Deconvolution2/blob/main/colour_deconvolution2.jar

2. Stardist: cells segmentation https://github.com/stardist/stardist