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nickjcroucher / gubbins

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
http://nickjcroucher.github.io/gubbins/
GNU General Public License v2.0
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Conda Gubbins 3.3.4 : Not able to install #398

Closed ajkarloss closed 5 months ago

ajkarloss commented 6 months ago

H, Thanks a lot for the updates. But not able to install the 3.3.4 through conda. We tried in CentOS and Mac. Both are just hanging there.

nickjcroucher commented 6 months ago

Can you install from source?

ajkarloss commented 6 months ago

I dont have sudo access to install it in our VM/server.

nickjcroucher commented 5 months ago

Please try to install v3.3.5, released on conda today.

ajkarloss commented 5 months ago

The problem still persists: In mac, it installed 2.3.4 in MacOS and "trying to Install" in CentOS for hours.

nickjcroucher commented 5 months ago

What are the commands you are using?

ajkarloss commented 5 months ago

conda install bioconda::gubbins

ajkarloss commented 5 months ago

https://anaconda.org/bioconda/gubbins

nickjcroucher commented 5 months ago

What about a fresh env? mamba create -c bioconda -n gubbins_env gubbins python=3.9

ajkarloss commented 5 months ago

I will try and update you

ajkarloss commented 5 months ago

Yes, it works with Mamba in my mac. But I need to install in a production server where I dont have permission to Install mamba. I need to send a request to Admins to install and they may take time to check/test/install. Is there anyway to fix to install using normal conda? Thanks a lot. Gubbins is one of the most used tool in our workplace. Thanks a lot for the tool

nickjcroucher commented 5 months ago

Should work with conda as well, it will just be slower. Good luck!