niemasd / ViReflow

An elastically-scaling automated AWS pipeline for viral consensus sequence generation
GNU General Public License v3.0
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Add pangolin lineage call as optional output #10

Closed niemasd closed 3 years ago

niemasd commented 3 years ago

Given that SARS-CoV-2 researchers really need pangolin calls as well, it would be good to add Pangolin lineage calling as an optional step of the pipeline. More broadly, if there are similar virus-specific analyses that are "standard", it would be good to add them as optional steps

niemasd commented 3 years ago

Added in ViReflow v1.0.10