ENH: Move pandoc execution to the end of the runtime

nipreps / dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

https://www.nipreps.org/dmriprep

Apache License 2.0

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ENH: Move pandoc execution to the end of the runtime #154

Closed oesteban closed 3 years ago

oesteban commented 3 years ago

See nipreps/fmriprep#1710 for further context.

pep8speaks commented 3 years ago

Hello @oesteban, thank you for submitting the Pull Request!

In the file dmriprep/cli/run.py:

Line 131:18: F821 undefined name 'output_dir' Line 150:13: F821 undefined name 'logger' Line 154:17: F821 undefined name 'logger' Line 169:13: F821 undefined name 'logger' Line 173:17: F821 undefined name 'logger' Line 181:13: F821 undefined name 'logger'

To test for issues locally, pip install flake8 and then run flake8 dmriprep.

oesteban commented 3 years ago

No need for this.