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nipreps / dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
https://www.nipreps.org/dmriprep
Apache License 2.0
64 stars 24 forks source link

MAINT: Pin h5py separately. #176

Closed arokem closed 3 years ago

arokem commented 3 years ago

Trying to debug failing CI builds.

arokem commented 3 years ago

Do you understand why the GitHub Actions are failing to build here? Looks like an h5py problem, but I don't get it.

oesteban commented 3 years ago

Do you understand why the GitHub Actions are failing to build here? Looks like an h5py problem, but I don't get it.

I believe it tries to find a prior installation of libhdf5 and because it doesn't find it, tries to compile it. I just pushed a commit installing from ubuntu, but the question stands regarding whether we are going to require users to have the libraries installed when attempting to install from sources.