`infant_recon_all` does not guarantee reproducibility

mgxd commented 2 years ago

What happened?

Looking through the infant_recon_all log, this line pops up a few times.

mris_sphere supposed to be reproducible but seed not set

What command did you use?

infant_recon_all --age 2 --masked masked.nii.gz --outdir /work/sub-01 --subject sub-01

Version

21.0.0 release candidates (rc)

Relevant log output

No response

Add any additional information or context about the problem here.

cc @lillazollei

chiuhoward commented 5 months ago

was there an update on this? i also see this message but i'm not sure if it will affect the output?

mgxd commented 5 months ago

AFAIK, there hasn't been any updates to infant_recon_all - I haven't inspected the log in awhile but it's possible the seed used is logged there, perhaps @lillazollei may know

lillazollei commented 5 months ago

Hi All, Our update was delayed due to some staff turnover, so no updates have been made. Hopefully coming soon though. Let me know if you have any other questions. Lilla

From: Mathias Goncalves @.> Sent: Thursday, April 4, 2024 9:15 PM To: nipreps/nibabies @.> Cc: lillazollei @.>; Mention @.> Subject: Re: [nipreps/nibabies] infant_recon_all does not guarantee reproducibility (#127)

    External Email - Use Caution

AFAIK, there hasn't been any updates to infant_recon_all - I haven't inspected the log in awhile but it's possible the seed used is logged there, perhaps @lillazolleihttps://secure-web.cisco.com/1DCN9vOrATWA2jT0AIVCI8f-KTOs0V50Shia448Q0YBDtalTFnZ5kN50RDry5MX-e4fHTJTUgh9GtiZkOjiG16gD2u0AflnliBPplSb01THt493ZXkvXQGr2lg1yzG8r628j6GZH-TjMAgZi45k3r2Ip1nbscva3XgJvVlHjy8OlT0Pob9rIi3KUKjuYlWamu9LCi6n_sLulH4_li7tExvEQrzC4ugerlOT13EeQFOKZJaLiaXMm2oer1ajUlHOSlJGn-LKM6nXbDMlPSLvuw8IpVNgIKZaeCWM8PrlCnLMn1k8L1bfOgWC_FDgEqTDU2/https%3A%2F%2Fgithub.com%2Flillazollei may know

— Reply to this email directly, view it on GitHubhttps://secure-web.cisco.com/1SYC2tOdgCcjU_NHp9uBPdVzyvq2nvKdLat42K8wR16TIKeNr7WoyremAynPLEiQjiW4tzQ_ZHkTsv5YN5R1wWtw_SKXKj1oWAgJj-r-_JGARfQthEs-cssAuy4Wp1Yw_wk6Wpn30FBLfl4i1JYA0jnnq7FA2Gm8v42Al8PH2DqRzOSKyUj5yEQF0wcivQzIT5z6ZC0pi_9E_wLdnefyjVgOV5GJm2w9vKrDauPiBKA-GK-B4x6hSLrC5fgWyT6Opof9IIzRjME5TfoXtkuMA0APcBcqQvhGnE7Lti5A0JRS5yKxE7HoLEkJVPBO3xzgF/https%3A%2F%2Fgithub.com%2Fnipreps%2Fnibabies%2Fissues%2F127%23issuecomment-2038573042, or unsubscribehttps://secure-web.cisco.com/1N8g5dmbuvWs0hpMitRa1Qi-N10ZsxhyGZ7UzS-FYCeckeDdOvs-bZnbxgu0n7KsRcXHrkqLBIymOPNaTIK27qqetu_B5qd6QNt6tCCgBo-Cd10lXQ-FYdxnJdTom7sBcebsQql836t7o8utEbQVWz9n7b0zjCZXtTs6L4l9idud9AOJHTmYy3867GcSJZ8Xc0kJXCC6jCu9H6ANwBxa6l5A-dQ9ItNq_bGItQTHJfRmF5_MKoCS9Dt4IY_daV6OegEKBz52ARWNipfa8c1osevUmZEY8fT0Dbvoef-3NFyZC3VA1H4NnDTL_xPf-zSb5/https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FABRMDIMDP7EG6KZW3QDWDEDY3X3KFAVCNFSM5FUDFHXKU5DIOJSWCZC7NNSXTN2JONZXKZKDN5WW2ZLOOQ5TEMBTHA2TOMZQGQZA. You are receiving this because you were mentioned.Message ID: @.***>

[ { @.": "http://schema.org", @.": "EmailMessage", "potentialAction": { @.": "ViewAction", "target": "https://github.com/nipreps/nibabies/issues/127#issuecomment-2038573042", "url": "https://github.com/nipreps/nibabies/issues/127#issuecomment-2038573042", "name": "View Issue" }, "description": "View this Issue on GitHub", "publisher": { @.": "Organization", "name": "GitHub", "url": "https://github.com" } } ] The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline https://www.massgeneralbrigham.org/complianceline . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.

nipreps / nibabies