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nipreps
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smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
https://nipreps.github.io/smriprep
Apache License 2.0
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Task: Push packages from GHA, enable OIDC (trusted publishing)
#456
effigies
opened
4 days ago
0
Build(deps): Bump codecov/codecov-action from 4 to 5
#455
dependabot[bot]
opened
4 days ago
0
Missing fsLR surface files in the derivatives folder despite specifying fsLR in --output-space
#454
zhitao-guo
closed
1 month ago
3
FIX: Stop excluding FS minc_modify_header used during fallback registration
#453
psadil
closed
1 month ago
1
ENH: Add T2w as an additional channel in spatial normalization
#452
laviniawuensch
opened
2 months ago
0
ENH: Calculate T1/T2 ratio
#451
effigies
opened
2 months ago
0
FIX: Select function in segmentation resampling workflow
#450
mgxd
closed
3 months ago
3
REL: 0.16.0
#449
mgxd
closed
3 months ago
0
RF: Load package data with acres
#448
mgxd
closed
3 months ago
1
Write out fsnative surface files registered to fsLR space
#447
tsalo
opened
3 months ago
12
Add `space-fsaverage` to `sphere_reg` output files
#446
tsalo
closed
3 months ago
1
MNT: Unpin libitk 5.3 (ANTs 2.5.3 is built with 5.4)
#445
effigies
closed
3 months ago
1
chore: Clean up doc builds, environment, style checks
#444
effigies
closed
4 months ago
1
RF: Use genericised "anat" input/output for TemplateDimensions
#443
effigies
closed
3 months ago
1
Build(deps): Bump scikit-learn from 1.4.1.post1 to 1.5.0
#442
dependabot[bot]
closed
4 months ago
1
Build(deps): Bump urllib3 from 2.2.1 to 2.2.2
#441
dependabot[bot]
closed
4 months ago
1
FIX: Avoid datasink connection, which will always invalidate cache
#440
mgxd
closed
5 months ago
3
Build(deps): Bump requests from 2.31.0 to 2.32.0
#439
dependabot[bot]
closed
4 months ago
1
Error in documentation on nipreps.org/smriprep/usage.html
#438
crossmanith
opened
6 months ago
1
Build(deps): Bump jinja2 from 3.1.3 to 3.1.4
#437
dependabot[bot]
closed
4 months ago
1
STY: Apply ruff/flake8-implicit-str-concat rule ISC001
#436
DimitriPapadopoulos
closed
6 months ago
0
MNT: complete transition from flake8/black to ruff
#435
DimitriPapadopoulos
opened
6 months ago
1
Build(deps): Bump tqdm from 4.66.2 to 4.66.3
#434
dependabot[bot]
closed
4 months ago
1
RF: Remove much of the hardcoded `T1w` fields in favor of `anat`
#433
mgxd
closed
3 months ago
2
Myelin maps (T1w/T2w)
#432
effigies
opened
7 months ago
2
Brain tissue segmentation fmriprep wrong labelling for few subjects
#431
emvdmeijden
opened
7 months ago
0
Build(deps): Bump idna from 3.6 to 3.7
#430
dependabot[bot]
closed
4 months ago
1
Build(deps): Bump pillow from 10.2.0 to 10.3.0
#428
dependabot[bot]
closed
4 months ago
1
REL: 0.15.0
#427
effigies
closed
8 months ago
1
MNT: set copyright owner in LICENSE file
#426
DimitriPapadopoulos
closed
8 months ago
1
Build(deps): Bump the actions-infrastructure group with 2 updates
#425
dependabot[bot]
closed
8 months ago
0
FIX: Patch version for smriprep-docker
#424
effigies
closed
8 months ago
1
CI: Small cleanups to GHA
#423
effigies
closed
8 months ago
1
MNT: Apply Repo-Review suggestions
#422
DimitriPapadopoulos
closed
8 months ago
1
backport fix copy of dseg.tsv following templateflow update for LTS
#421
bpinsard
opened
8 months ago
2
[FIX] Require recent templateflow, select correct aparc dseg.tsv
#420
bpinsard
closed
8 months ago
2
CHORE: Update ruff, ignore certain rules
#419
mgxd
closed
8 months ago
2
FIX: Fetch templates during workflow construction
#418
mgxd
closed
8 months ago
1
REL: 0.14.0
#417
effigies
closed
8 months ago
2
FIX: Re-add cohort identifier to template name
#416
mgxd
closed
8 months ago
9
fmriprep error "ValueError: 'MNIPediatricAsym:cohort-3' is not in list"
#415
emvdmeijden
closed
8 months ago
1
Any smriprep fix for Freesurfer 7.3.2 FLAIR Pial Surface placement bug?
#414
nordicpioneer
opened
9 months ago
3
Support newMSM
#413
effigies
opened
9 months ago
0
Build(deps): Bump codecov/codecov-action from 3 to 4
#412
dependabot[bot]
closed
9 months ago
0
Build(deps): Bump pillow from 10.0.1 to 10.2.0
#411
dependabot[bot]
closed
8 months ago
3
Build(deps): Bump jinja2 from 3.1.2 to 3.1.3
#410
dependabot[bot]
closed
8 months ago
4
Build(deps): Bump actions/upload-artifact from 3 to 4
#409
dependabot[bot]
closed
8 months ago
2
Build(deps): Bump actions/download-artifact from 3 to 4
#408
dependabot[bot]
closed
8 months ago
2
23.2.0a3: `template_iterator_wf.select_xfm` failing with `MNIPediatricAsym` when cohort specified
#407
smeisler
opened
11 months ago
15
Build(deps): Bump actions/setup-python from 4 to 5
#406
dependabot[bot]
closed
11 months ago
1
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