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noaa-fisheries-integrated-toolbox / onboard-and-update

Request to onboard or update a tool in the NOAA FIT
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Onboarding Request: FIMS #23

Closed ChristineStawitz-NOAA closed 5 months ago

ChristineStawitz-NOAA commented 5 months ago

Active Development

Yes

Move source code

No

Tool name

The Fisheries Integrated Modeling System

Tool abbreviation

FIMS

Author(s)

Christine Stawitz, Andrea Havron, Matthew Supernaw, Bai Li, Kathryn Doering

Contributor(s)

Nathan Vaughan, Megumi Oshima, Ian Taylor, Kyle Shertzer, Kelli Johnson, Cole Monnahan, Chris Legault, Kristan Blackhart, Patrick Lynch, Rick Methot, Tim Miller, Huihua Lee, EJ Dick, Peter Kuriyama, Jon Brodziak

Tool logo

https://github.com/NOAA-FIMS/noaa-fims.github.io/blob/main/assets/img/logo.png

NOAA Internal

Yes

Maintainer Name

Christine Stawitz

Maintainer Email

christine.stawitz@noaa.gov

Background Text

The NOAA Fisheries Integrated Modeling System is a software system designed and architected to support next-generation fisheries stock assessment, ecosystem, and socioeconomic modeling. A team of experts within NOAA Fisheries is designing and developing the system, and we are advised by the FIMS Council which includes academic, industry, and international partners. We have an operational software system that was released to the public in 2023 and is ready for beta testing, although it is still under active development. Users and developers are welcome to submit feedback using Github issues.

Citation

https://doi.org/10.5281/zenodo.10393209

References

https://zenodo.org/doi/10.5281/zenodo.10393209

Associated Tools

No response

User Organizations

https://ror.org/04950b532

Online App Link

No response

Executable Link

No response

Website Link

No response

Documentation Link

https://noaa-fims.github.io/FIMS/

Source Code Link

https://github.com/FIMS/FIMS

Software Badges

https://github.com/NOAA-FIMS/FIMS/workflows/call-r-cmd-check/badge.svg https://codecov.io/gh/NOAA-FIMS/FIMS/branch/main/graph/badge.svg https://img.shields.io/badge/lifecycle-experimental-orange.svg

Installation instructions

The following software is required:

Toolbox Drawers

Keywords

Uses Github Releases

Yes

Static version number

0.2.0

Comments

No response

Code of Conduct

k-doering-NOAA commented 5 months ago

Automatically generated JSON for the onboarding request: 

{
  "active_development": true,
  "tool_name": "The Fisheries Integrated Modeling System",
  "tool_abbreviation": "FIMS",
  "authors": "Christine Stawitz, Andrea Havron, Matthew Supernaw, Bai Li, Kathryn Doering",
  "contributors": "Nathan Vaughan, Megumi Oshima, Ian Taylor, Kyle Shertzer, Kelli Johnson, Cole Monnahan, Chris Legault, Kristan Blackhart, Patrick Lynch, Rick Methot, Tim Miller, Huihua Lee, EJ Dick, Peter Kuriyama, Jon Brodziak",
  "tool_logo": "https://github.com/NOAA-FIMS/noaa-fims.github.io/blob/main/assets/img/logo.png",
  "noaa_internal": true,
  "maintainer_name": "Christine Stawitz",
  "maintainer_email": "christine.stawitz@noaa.gov",
  "background_text": "The NOAA Fisheries Integrated Modeling System is a software system designed and architected to support next-generation fisheries stock assessment, ecosystem, and socioeconomic modeling. A team of experts within NOAA Fisheries is designing and developing the system, and we are advised by the FIMS Council which includes academic, industry, and international partners. We have an operational software system that was released to the public in 2023 and is ready for beta testing, although it is still under active development. Users and developers are welcome to submit feedback using Github issues. ",
  "citation": "https://doi.org/10.5281/zenodo.10393209",
  "references": ["https://zenodo.org/doi/10.5281/zenodo.10393209"],
  "user_organizations": ["https://ror.org/04950b532"],
  "documentation_link": "https://noaa-fims.github.io/FIMS/",
  "source_code_link": "https://github.com/FIMS/FIMS",
  "software_badges": ["https://github.com/NOAA-FIMS/FIMS/workflows/call-r-cmd-check/badge.svg\nhttps://codecov.io/gh/NOAA-FIMS/FIMS/branch/main/graph/badge.svg\nhttps://img.shields.io/badge/lifecycle-experimental-orange.svg"],
  "installation_instructions": "The following software is required:\n* R version 4.0.0 or newer (or RStudio version 1.2.5042 or newer)\nthe remotes R package\n* TMB version 1.8.0 or newer (install instructions are [here](https://github.com/kaskr/adcomp/wiki/Download).)\n**Windows Users**\n* Rtools4 (available from [here](https://cran.r-project.org/bin/windows/Rtools/rtools40.html))\n```\nremotes::install_github(\"NOAA-FIMS/FIMS\")\nlibrary(FIMS)\n```",
  "toolbox_drawers": ["Fish and Fisheries"],
  "keywords": ["Age Structured Model", "C++", "R Package", "Stock Assessment Model", "TMB"],
  "uses_github_releases": true,
  "static_version_number": "0.2.0"
}
MargaretSiple-NOAA commented 5 months ago

This is my drawer, so I'm going to follow this thread -- I got too eager and asked to be assigned and that is not necessary! Kathryn says we're just onboarding as usual.

k-doering-NOAA commented 5 months ago

@ChristineStawitz-NOAA could you check and see if there are any changes you would like to this preview of the FIMS page?

ChristineStawitz-NOAA commented 5 months ago

Thank you, @k-doering-NOAA ! Looks great to me.

k-doering-NOAA commented 5 months ago

Thanks @ChristineStawitz-NOAA (and @MargaretSiple-NOAA!)

FIMS has been onboarded: https://noaa-fisheries-integrated-toolbox.github.io/FIMS