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noaa-oar-arl / UFS-Aerosol-Config

NOAA OAR repository of UFS-Aerosol configuration files and cases
MIT License
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Questions about cloning/building/running feature/7.1 #25

Closed andytangborn closed 2 years ago

andytangborn commented 3 years ago

@rmontuoro @bbakernoaa @zhanglikate

I'm not clear on the step to checkout a particular branch.

I have already cloned:

git clone -b feature/p7.1 --recursive https://github.com/rmontuoro/global-workflow.git

And to checkout a particular branch, the instructions are:

cd sorc/ sh checkout.sh -c -r -u https://github.com/rmontuoro/ufs-weather-model.git

followed by

sh build_all.sh -c (or -a).

I'm not sure what to use for . It seems that I have already cloned branch feature/p7.1

Am I missing some steps, such as (I'm not sure what I need to do with these):

feature/p7.1 Add -u option to checkout.sh to download the ufs-weather-model code from a non-authoritative repository Add case file for P7.1 (prototype7.1.yaml)

bbakernoaa commented 3 years ago

@andytangborn

have you gotten this working?

I think that the checkout command should be

sh checkout.sh -c -r feature/p7.1-gocart-dev -u https://github.com/rmontuoro/ufs-weather-model.git

andytangborn commented 3 years ago

@Barry Baker - NOAA Affiliate @.***>

Thanks Barry. I'll try that. I've been working on comparisons between JEDI aerosol forecasts and MERRA-2, which required some regridding. I'll get back to this workflow later today.

On Thu, Sep 9, 2021 at 9:59 AM Barry Baker @.***> wrote:

@andytangborn https://github.com/andytangborn

have you gotten this working?

I think that the checkout command should be

sh checkout.sh -c -r feature/p7.1-gocart-dev -u https://github.com/rmontuoro/ufs-weather-model.git

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andytangborn commented 3 years ago

@Barry Baker - NOAA Affiliate @.> @Raffaele Montuoro - NOAA Affiliate @.>

I've set up an experiment successfully and I'm just starting to run. The default resolution seems to be C384. Is that what I should try to run? I noticed that there are IC for C384 on 2019070100, but on 2019070200 there are only ICs for C96. I'm assuming that IC for both days are needed, as before.

Andy

On Thu, Sep 9, 2021 at 10:28 AM Andrew Tangborn - NOAA Affiliate < @.***> wrote:

@Barry Baker - NOAA Affiliate @.***>

Thanks Barry. I'll try that. I've been working on comparisons between JEDI aerosol forecasts and MERRA-2, which required some regridding. I'll get back to this workflow later today.

On Thu, Sep 9, 2021 at 9:59 AM Barry Baker @.***> wrote:

@andytangborn https://github.com/andytangborn

have you gotten this working?

I think that the checkout command should be

sh checkout.sh -c -r feature/p7.1-gocart-dev -u https://github.com/rmontuoro/ufs-weather-model.git

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/noaa-oar-arl/UFS-Aerosol-Config/issues/25#issuecomment-916124342, or unsubscribe https://github.com/notifications/unsubscribe-auth/ARAAHYP6B6OJCP72RFJMNJLUBC4TNANCNFSM5DSXMEZQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

bbakernoaa commented 3 years ago

@andytangborn The target resolution is C384 127L. But the model can be run at C96 and 64L. Where were you looking for ICs?

The IC directory for the P7.1 runs are only generated on the 1st and 15th of each month. But Shan has created some for daily forecasting for a different purpose.

/scratch1/BMC/gsd-fv3-dev/Shan.Sun/judy_ic_only/FV3GFSrun

You can see a larger thread on ICs in issue #15

andytangborn commented 3 years ago

Barry,

Thanks. I was looking in /scratch1/NCEPDEV/nems/Raffaele.Montuoro/data/ICS/FV3ICS/2019070200/gfs/ where I got them before.

But I see all the restarts where you pointed me to.

Andy

On Mon, Sep 13, 2021 at 3:29 PM Barry Baker @.***> wrote:

@andytangborn https://github.com/andytangborn The target resolution is C384 127L. But the model can be run at C96 and 64L. Where were you looking for ICs?

The IC directory for the P7.1 runs are only generated on the 1st and 15th of each month. But Shan has created some for daily forecasting for a different purpose.

/scratch1/BMC/gsd-fv3-dev/Shan.Sun/judy_ic_only/FV3GFSrun

You can see a larger thread on ICs in issue #15 https://github.com/noaa-oar-arl/UFS-Aerosol-Config/issues/15

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andytangborn commented 3 years ago

I've gotten an error (see below). But first I want to make sure I'm running the right case. I ran:

aerosol_firex_forecast

and got the error :

20210913 201608.456 ERROR PET000 ESMF_StateAPI.cppF90:2767 ESMF_StateGet Not found - no ESMF_State found named: AERO

20210913 201608.457 ERROR PET000 Aerosol_Cap.F90:346 Invalid object - Passing error in return code

20210913 201608.457 ERROR PET000 CHM:src/addon/NUOPC/src/NUOPC_ModelBase.F90:2150 Invalid object - Passing error in return code

20210913 201608.457 ERROR PET000 EARTH Grid Comp:src/addon/NUOPC/src/NUOPC_Driver.F90:2570 Invalid object - Phase 'IPDv03p7' Initialize for modelComp 2: CHM did not return ESMF_SUCCESS

20210913 201608.457 ERROR PET000 EARTH Grid Comp:src/addon/NUOPC/src/NUOPC_Driver.F90:2405 Invalid object - Passing error in return code

20210913 201608.457 ERROR PET000 EARTH Grid Comp:src/addon/NUOPC/src/NUOPC_Driver.F90:2193 Invalid object - Passing error in return code

20210913 201608.457 ERROR PET000 EARTH Grid Comp:src/addon/NUOPC/src/NUOPC_Driver.F90:472 Invalid object - Passing error in return code

20210913 201608.457 ERROR PET000 MAIN_NEMS.F90:429 Invalid object - Aborting NEMS

in the log file:

PET000.ESMF_LogFile

I'm also surprised by the large number of log files:

PET000 to PET311

On Mon, Sep 13, 2021 at 3:40 PM Andrew Tangborn - NOAA Affiliate < @.***> wrote:

Barry,

Thanks. I was looking in /scratch1/NCEPDEV/nems/Raffaele.Montuoro/data/ICS/FV3ICS/2019070200/gfs/ where I got them before.

But I see all the restarts where you pointed me to.

Andy

On Mon, Sep 13, 2021 at 3:29 PM Barry Baker @.***> wrote:

@andytangborn https://github.com/andytangborn The target resolution is C384 127L. But the model can be run at C96 and 64L. Where were you looking for ICs?

The IC directory for the P7.1 runs are only generated on the 1st and 15th of each month. But Shan has created some for daily forecasting for a different purpose.

/scratch1/BMC/gsd-fv3-dev/Shan.Sun/judy_ic_only/FV3GFSrun

You can see a larger thread on ICs in issue #15 https://github.com/noaa-oar-arl/UFS-Aerosol-Config/issues/15

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/noaa-oar-arl/UFS-Aerosol-Config/issues/25#issuecomment-918508850, or unsubscribe https://github.com/notifications/unsubscribe-auth/ARAAHYJ4XXXLKJIYUJ4ONILUBZGJ3ANCNFSM5DSXMEZQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

andytangborn commented 3 years ago

I've looked at the build directory a bit more. It's possible that I should have used:

"sh build_all.sh -a"

instead of "sh build_all.sh -c". Can you confirm that this might be the issue?

I realized after posting my previous comment that the large number of log files were just the different processors.

@bbakernoaa @rmontuoro

bbakernoaa commented 3 years ago

@andytangborn I think that you can use sh build_all.sh -c for both fully coupled and atm-aero only

andytangborn commented 3 years ago

If that's the case, then I'll still need to find out the cause the error message :

ESMF_StateAPI.cppF90:2767 ESMF_StateGet Not found - no ESMF_State found named: AERO

I'm rebuilding using the "-a" flag and will try that.

On Tue, Sep 14, 2021 at 3:51 PM Barry Baker @.***> wrote:

@andytangborn https://github.com/andytangborn I think that you can use sh build_all.sh -c for both fully coupled and atm-aero only

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andytangborn commented 3 years ago

I've tried rebuilding using "-a" instead of "-c" with build_all.sh, but I get the same error. It appears that AERO is not recognized by ESMF, and I think it's likely that my build is incorrect so that AERO is not included. I expect that there could be a place to look in the config files that might give a clue as to the source of the problem. Any suggestions would be helpful.

bbakernoaa commented 3 years ago

When you look in sorc/ufs_coupled.fd do you see the GOCART directory?

andytangborn commented 3 years ago

Yes, it is there.

bbakernoaa commented 3 years ago

Andy could you point me to your directory and I'll try to take a look

andytangborn commented 3 years ago

Thanks! It's in:

/scratch1/NCEPDEV/da/Andrew.Tangborn/Workflows/aerosol_7p1/global-workflow

andytangborn commented 3 years ago

Hi Barry, could you point me to your build directory? I'd like to do a diff on the files and see if I can locate what is wrong with my build.

Andy

On Thu, Sep 16, 2021 at 2:25 PM Barry Baker @.***> wrote:

Andy could you point me to your directory and I'll try to take a look

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bbakernoaa commented 3 years ago

/scratch2/NAGAPE/arl/Barry.Baker/gwp71

On Mon, Sep 20, 2021 at 11:27 AM andytangborn @.***> wrote:

Hi Barry, could you point me to your build directory? I'd like to do a diff on the files and see if I can locate what is wrong with my build.

Andy

On Thu, Sep 16, 2021 at 2:25 PM Barry Baker @.***> wrote:

Andy could you point me to your directory and I'll try to take a look

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andytangborn commented 3 years ago

Thanks.

On Mon, Sep 20, 2021 at 11:49 AM Barry Baker @.***> wrote:

/scratch2/NAGAPE/arl/Barry.Baker/gwp71

On Mon, Sep 20, 2021 at 11:27 AM andytangborn @.***> wrote:

Hi Barry, could you point me to your build directory? I'd like to do a diff on the files and see if I can locate what is wrong with my build.

Andy

On Thu, Sep 16, 2021 at 2:25 PM Barry Baker @.***> wrote:

Andy could you point me to your directory and I'll try to take a look

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andytangborn commented 3 years ago

So I do find quite a few differences in config.base :

What I have that's different is

export print_esmf=".true." export cplfx=".false." export cplice=".false." export cplwav=".false." export cplwav2atm=".false." export nems_temp="atm_aer" export CCPP_SUITE="FV3_GFS_v16"

I need to find what I should do differently in the setup/build steps to get the values you have in your config.base

On Mon, Sep 20, 2021 at 12:07 PM Andrew Tangborn - NOAA Affiliate < @.***> wrote:

Thanks.

On Mon, Sep 20, 2021 at 11:49 AM Barry Baker @.***> wrote:

/scratch2/NAGAPE/arl/Barry.Baker/gwp71

On Mon, Sep 20, 2021 at 11:27 AM andytangborn @.***> wrote:

Hi Barry, could you point me to your build directory? I'd like to do a diff on the files and see if I can locate what is wrong with my build.

Andy

On Thu, Sep 16, 2021 at 2:25 PM Barry Baker @.***> wrote:

Andy could you point me to your directory and I'll try to take a look

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <

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bbakernoaa commented 3 years ago

andy I think that we should set up a chat together so that we can get this resolved. It would help to fully understand what is happening.

On Mon, Sep 20, 2021 at 1:56 PM andytangborn @.***> wrote:

So I do find quite a few differences in config.base :

What I have that's different is

export print_esmf=".true." export cplfx=".false." export cplice=".false." export cplwav=".false." export cplwav2atm=".false." export nems_temp="atm_aer" export CCPP_SUITE="FV3_GFS_v16"

I need to find what I should do differently in the setup/build steps to get the values you have in your config.base

On Mon, Sep 20, 2021 at 12:07 PM Andrew Tangborn - NOAA Affiliate < @.***> wrote:

Thanks.

On Mon, Sep 20, 2021 at 11:49 AM Barry Baker @.***> wrote:

/scratch2/NAGAPE/arl/Barry.Baker/gwp71

On Mon, Sep 20, 2021 at 11:27 AM andytangborn @.***> wrote:

Hi Barry, could you point me to your build directory? I'd like to do a diff on the files and see if I can locate what is wrong with my build.

Andy

On Thu, Sep 16, 2021 at 2:25 PM Barry Baker @.***> wrote:

Andy could you point me to your directory and I'll try to take a look

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <

https://github.com/noaa-oar-arl/UFS-Aerosol-Config/issues/25#issuecomment-921141419

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andytangborn commented 3 years ago

Yes, that would be very helpful. This week I just have a meeting from 11-12 on Tuesday, 10:30-11:30 and 1:30-2:30 on Wednesday, nothing on Thursday, and then 1-2 p.m. on Friday. Otherwise I'm pretty much open.

Andy

On Mon, Sep 20, 2021 at 2:25 PM Barry Baker @.***> wrote:

andy I think that we should set up a chat together so that we can get this resolved. It would help to fully understand what is happening.

On Mon, Sep 20, 2021 at 1:56 PM andytangborn @.***> wrote:

So I do find quite a few differences in config.base :

What I have that's different is

export print_esmf=".true." export cplfx=".false." export cplice=".false." export cplwav=".false." export cplwav2atm=".false." export nems_temp="atm_aer" export CCPP_SUITE="FV3_GFS_v16"

I need to find what I should do differently in the setup/build steps to get the values you have in your config.base

On Mon, Sep 20, 2021 at 12:07 PM Andrew Tangborn - NOAA Affiliate < @.***> wrote:

Thanks.

On Mon, Sep 20, 2021 at 11:49 AM Barry Baker @.***> wrote:

/scratch2/NAGAPE/arl/Barry.Baker/gwp71

On Mon, Sep 20, 2021 at 11:27 AM andytangborn @.***> wrote:

Hi Barry, could you point me to your build directory? I'd like to do a diff on the files and see if I can locate what is wrong with my build.

Andy

On Thu, Sep 16, 2021 at 2:25 PM Barry Baker @.***> wrote:

Andy could you point me to your directory and I'll try to take a look

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <

https://github.com/noaa-oar-arl/UFS-Aerosol-Config/issues/25#issuecomment-921141419

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andytangborn commented 2 years ago

@bbakernoaa @rmontuoro Ivanka has asked me to start to work on getting DA into the coupled workflow. My understanding is that the first step is to be able to run the system with warm restarts. Is there a newer version that I can try. Last month I got the version "feature/p7.1-gocart-dev " to run for one day, and I'd like to do the same (and perhaps longer with a newer version).

bbakernoaa commented 2 years ago

@andytangborn Right now I think that is the latest that we have. I may potentially have an update for the dust component but it isn't ready yet. And I don't think that there will be any huge update that would break any of the DA work that you are doing, at least structurally.

On Fri, Oct 22, 2021 at 9:22 AM andytangborn @.***> wrote:

@bbakernoaa https://github.com/bbakernoaa @rmontuoro https://github.com/rmontuoro Ivanka has asked me to start to work on getting DA into the coupled workflow. My understanding is that the first step is to be able to run the system with warm restarts. Is there a newer version that I can try. Last month I got the version "feature/p7.1-gocart-dev " to run for one day, and I'd like to do the same (and perhaps longer with a newer version).

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andytangborn commented 2 years ago

Ok. I'll go back to running that version. I did have some problem with getting the 2nd day to run, and will try it again. But mostly, I'll need to start to understand where the DA is going to fit into the workflow.

On Fri, Oct 22, 2021 at 9:25 AM Barry Baker @.***> wrote:

@andytangborn Right now I think that is the latest that we have. I may potentially have an update for the dust component but it isn't ready yet. And I don't think that there will be any huge update that would break any of the DA work that you are doing, at least structurally.

On Fri, Oct 22, 2021 at 9:22 AM andytangborn @.***> wrote:

@bbakernoaa https://github.com/bbakernoaa @rmontuoro https://github.com/rmontuoro Ivanka has asked me to start to work on getting DA into the coupled workflow. My understanding is that the first step is to be able to run the system with warm restarts. Is there a newer version that I can try. Last month I got the version "feature/p7.1-gocart-dev " to run for one day, and I'd like to do the same (and perhaps longer with a newer version).

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bbakernoaa commented 2 years ago

Sounds good. My two cents would be something like this

201908290000 ics.jgfs_emc_mom6ic - - - - - 201908290000 ics.jgfs_init_chem - - - - - 201908290000 DA_GOES_HERE - - - - - 201908290000 gfs.forecast.highres - - - - - 201908290000 gfs.post.p_anl - - - - - 201908290000 gfs.post.p_000 - - - - - 201908290000 gfs.post.p_006 - - - - - 201908290000 gfs.post.p_012 - - - - - 201908290000 gfs.post.p_018 - - - - - 201908290000 gfs.post.p_024 - - - - - 201908290000 gfs.jgfs_emc_vrfy - - - - - 201908290000 final - - - - -

andytangborn commented 2 years ago

Thanks. That points me in the right direction.

On Fri, Oct 22, 2021 at 9:35 AM Barry Baker @.***> wrote:

Sounds good. My two cents would be something like this

201908290000 ics.jgfs_emc_mom6ic -

201908290000 ics.jgfs_init_chem -

*201908290000 DA_GOES_HERE -

      • -* 201908290000 gfs.forecast.highres -

  • 201908290000 gfs.post.p_anl -

  • 201908290000 gfs.post.p_000 -

  • 201908290000 gfs.post.p_006 -

  • 201908290000 gfs.post.p_012 -

  • 201908290000 gfs.post.p_018 -

  • 201908290000 gfs.post.p_024 -

  • 201908290000 gfs.jgfs_emc_vrfy -

  • 201908290000 final -

On Fri, Oct 22, 2021 at 9:32 AM andytangborn @.***> wrote:

Ok. I'll go back to running that version. I did have some problem with getting the 2nd day to run, and will try it again. But mostly, I'll need to start to understand where the DA is going to fit into the workflow.

On Fri, Oct 22, 2021 at 9:25 AM Barry Baker @.***> wrote:

@andytangborn Right now I think that is the latest that we have. I may potentially have an update for the dust component but it isn't ready yet. And I don't think that there will be any huge update that would break any of the DA work that you are doing, at least structurally.

On Fri, Oct 22, 2021 at 9:22 AM andytangborn @.***> wrote:

@bbakernoaa https://github.com/bbakernoaa @rmontuoro https://github.com/rmontuoro Ivanka has asked me to start to work on getting DA into the coupled workflow. My understanding is that the first step is to be able to run the system with warm restarts. Is there a newer version that I can try. Last month I got the version "feature/p7.1-gocart-dev " to run for one day, and I'd like to do the same (and perhaps longer with a newer version).

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