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nvnieuwk / nft-bam

An nf-test plugin for reading the contents of SAM/BAM/CRAM files in assertions
https://nvnieuwk.github.io/nft-bam/
MIT License
6 stars 2 forks source link

Add dupReadCounts info to getStatistics() output #13

Closed gloubsi closed 1 month ago

gloubsi commented 1 month ago

Hello,

It would be nice to add a field dupReadCounts (or similar name) in the object from getStatistics() to have the number of marked reads duplicates that we have in the input bam. It would be very useful.

Thank you in advance.

Best regards.

nvnieuwk commented 1 month ago

Thank you for the feature request! I'll definitely look into this!