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ocxtal / minialign

[IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long reads
MIT License
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Support for Quiver #4

Open wjidea opened 7 years ago

wjidea commented 7 years ago

Hi Hajime,

Just curious, is minialign alignment accurate enough for Quiver genomic consensus corrections? Or do you have any other suggestions on sequence consensus corrections?

Thanks,

JW

ocxtal commented 7 years ago

Hi Jie,

I'm not sure but, the output alignment paths are (should be 😅) almost compatible with that of BWA-MEM and BLASR. So for now I think it is probably applicable to the Quiver algorithm...

However, I'm also interested in the issue. I've just started evaluating it and will check if there is significant differences in the result.

Thanks,

Hajime Suzuki

wjidea commented 7 years ago

Good to know.

Thanks,

Jie