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pygr
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Increase robustness of BLAST tests
#88
GoogleCodeExporter
closed
8 years ago
6
Commit 'runtest_single' to master.
#87
GoogleCodeExporter
closed
8 years ago
3
Commit 'cleanflag' branch to master
#86
GoogleCodeExporter
closed
8 years ago
1
Commit 'nicer-error'' branch to master
#85
GoogleCodeExporter
closed
8 years ago
2
Slicing on LPO produces Bus error
#84
GoogleCodeExporter
closed
8 years ago
4
Track running time of megatests
#83
GoogleCodeExporter
closed
8 years ago
2
Update setup.cfg
#82
GoogleCodeExporter
closed
8 years ago
1
Attribute error, ignored, in graph_test under python2.3
#81
GoogleCodeExporter
closed
8 years ago
5
pygr.downloader uses subprocess, which is not python2.3 compatible.
#80
GoogleCodeExporter
closed
8 years ago
7
Multi-sequence blast support
#79
GoogleCodeExporter
closed
8 years ago
13
Get rid of vague or imprecise error messages from tests
#78
GoogleCodeExporter
closed
8 years ago
5
Maintain a dependency tree of tests
#77
GoogleCodeExporter
opened
8 years ago
3
ensembl.SeqRegion gives KeyError if missing coord system or bad seqID
#76
GoogleCodeExporter
closed
8 years ago
8
Implement a remote-management interface for XML-RPC servers
#75
GoogleCodeExporter
opened
8 years ago
1
undefined 'al' in NLMSA.add_aligned_intervals
#74
GoogleCodeExporter
closed
8 years ago
1
Incorporate metabase branch
#73
GoogleCodeExporter
closed
8 years ago
2
Fix zombie dependence on pygr.poa
#72
GoogleCodeExporter
closed
8 years ago
0
Support write operations to SQL databases
#71
GoogleCodeExporter
closed
8 years ago
5
Support for sqlite
#70
GoogleCodeExporter
closed
8 years ago
6
Make megatests more portable
#69
GoogleCodeExporter
closed
8 years ago
14
Find, review, and post Rachel's summer docs
#68
GoogleCodeExporter
opened
8 years ago
1
Test Istvan's new setup.py on multiple platforms
#67
GoogleCodeExporter
closed
8 years ago
14
Code review: seqdb.py
#66
GoogleCodeExporter
opened
8 years ago
7
Code review: Istvan's test rewrite branch
#65
GoogleCodeExporter
closed
8 years ago
5
[deleted issue]
#64
GoogleCodeExporter
closed
8 years ago
0
Reduce complexity of setup.py
#63
GoogleCodeExporter
closed
8 years ago
3
Shorter notifications, messages
#62
GoogleCodeExporter
opened
8 years ago
1
adding logging functionality
#61
GoogleCodeExporter
closed
8 years ago
5
(patch) windows platform needs a 'b' flag to indicate binary formats
#60
GoogleCodeExporter
closed
8 years ago
9
Move annotation classes to a separate module
#59
GoogleCodeExporter
closed
8 years ago
5
Refactor top-level pygr.Data namespace access
#58
GoogleCodeExporter
closed
8 years ago
2
Consider simplifying SeqPath start,stop attribute handling
#57
GoogleCodeExporter
closed
8 years ago
5
unable to access the sequence object via a saved bound schema attribute :(
#56
GoogleCodeExporter
closed
8 years ago
3
Types of acceptable sourceDB or targetDB for sqlgraph.GraphView
#55
GoogleCodeExporter
closed
8 years ago
2
sqlgraph.GraphView unpickle-able error
#54
GoogleCodeExporter
closed
8 years ago
9
sqlgraph.GraphView ORDER-BY bug
#53
GoogleCodeExporter
closed
8 years ago
6
Move from shelve to sqlite3 storage?
#52
GoogleCodeExporter
opened
8 years ago
5
sys.path problems in our test framework
#51
GoogleCodeExporter
closed
8 years ago
3
SQL "view" mapping and graph transformations
#50
GoogleCodeExporter
closed
8 years ago
4
Initial delay for membership checking in seqdb.BlastDB
#49
GoogleCodeExporter
closed
8 years ago
7
megatest failure: cannot delete from dict
#48
GoogleCodeExporter
closed
8 years ago
4
KeyError on deleting pygr.Data resource
#47
GoogleCodeExporter
closed
8 years ago
5
decorator syntax incompatible with Python 2.3
#46
GoogleCodeExporter
closed
8 years ago
4
BlastDB has gotten slow due to cache
#45
GoogleCodeExporter
closed
8 years ago
7
tblastn and blastx support
#44
GoogleCodeExporter
closed
8 years ago
8
add a test for SQLSequence class method problem
#43
GoogleCodeExporter
closed
8 years ago
5
KeyError for BLAST results that return no hits
#42
GoogleCodeExporter
closed
8 years ago
3
TBLASTN parsing error
#41
GoogleCodeExporter
closed
8 years ago
3
add NLMSA convenience method for loading aligned intervals from any source
#40
GoogleCodeExporter
closed
8 years ago
12
add schema grouping to pygr.Data
#39
GoogleCodeExporter
opened
8 years ago
1
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