ReproTube: YouTube for Reproducible Neuroimaging

[yarikoptic]

Title

ReproTube: YouTube for Reproducible Neuroimaging

Short description and the goals for the OHBM BrainHack

• establish automated workflow to update/maintain collection of videos, captions, metadata
• fix up automated captions
• push fixed up captions back to youtube (research feasibility for automation on that)
• use/work with DataCat (https://github.com/ohbm/hackathon2022/issues/53) project to provide a convenient front-end
• establish backup

Some rough ideas for more "exciting" projects

• based on captions/metadata establish "recommendation engine", express those in metadata, expose via DataCat
• establish automated extraction/annotation for extra features in videos, e.g.
  • boundaries of sections
  • slides/section titles
  • extract acknowledgement/names from the slides (e.g. grant numbers etc) which otherwise would be missing from metadata/captions
• establish search engine to search up videos to answer a specific question, e.g.
  • "run fmriprep on HPC"
  • .... provide a query you would like to see ...
• suggest more

Link to the Project

https://github.com/ReproNim/ReproTube/

Image for the OHBM brainhack website

No response

Project lead

Yaroslav O. Halchenko @yarikoptic

Main Hub

Glasgow

Other Hub covered by the leaders

• [X] Glasgow
• [ ] Asia / Pacific
• [ ] Europe / Middle East / Africa
• [X] Americas

Skills

We welcome all kinds of contributions from various skills at any level.

It could range from proof-reading and fixing up captions, to setting up and writing documentation, discussing relevant functionality, or user-experience-testing, to bash and/or Python-based implementation (or refactoring) of the desired functionality and applying the infrastructure to other use cases, e.g. "MyLabTube" etc.

Recommended tutorials for new contributors

• [ ] Set up a brainhack friendly computing environment
• [X] A introduction to Bash
• [X] Python: Writing a script
• [ ] Python: Data analysis with Python
• [ ] Python: Visualisation
• [ ] Machine learning basics
• [ ] BIDS
• [ ] Machine learning for neuroimaging
• [ ] VCS: Using Git and Github
• [X] VCS: Data management with Datalad
• [ ] Virtualization
• [ ] High Performance Computing: Oracle cloud resource

Good first issues

No response

Twitter summary

Reproducible Neuroimaging YouTube via git-annex, DataLad, DataCat, etc. Use it or create your own.

Short name for the Discord chat channel (~15 chars)

ReproTube

Please read and follow the OHBM Code of Conduct

• [X] I agree to follow the OHBM Code of Conduct during the hackathon

[djarecka]

Thank you for submitting the project! We have 35 projects right now, woohoo! But that means the projects pitches will have to be short. We will give you tomorrow 2 minutes to pitch your project, you can have one slide or no slides! If you decide to use a slide, please include the link to the slide here.

And don't worry, you will still have more time to talk about your project during the BrainHack :-)