Boutiques Integration to Datalad

[bcmcpher]

Boutiques Integration to Datalad

Project Description

The idea is to create a datalad plugin for boutiques functionality.

Datalad has a lot of useful functionality already, specifically: rerunning commands or scripts and "installing" containers to a dataset.

Boutiques is a tool for annotating an analysis script. It documents the inputs, outputs, and container to run a specific script. It's basically a .json sidecar for your analysis.

The goal of the extension will be to create a datalad boutiques command that can streamline:

• installing a boutiques command / container from zenodo to a datalad dataset
• call the installed container on data within the dataset
• provide useful ways of tracking the outputs
• stringing multiple pipelines together

Link to the Project

https://github.com/bcmcpher/dl-boutiques

Project lead

Brent McPherson (bcmcpher)

Main Hub

Montreal

Other Hub covered by the leaders

• [x] Montreal
• [ ] Asia / Pacific
• [ ] Europe / Middle East / Africa
• [ ] Americas

Skills

• python (both tools are python based)

some experience (or interest in learning the mechanics of)

• datalad
• boutiques

Short name for the Discord chat channel (~15 chars)

dl-boutiques

Please read and follow the OHBM Code of Conduct

• [X] I agree to follow the OHBM Code of Conduct during the hackathon

[ufangYang]

hi @bcmcpher can you provide the content and/or figure for this project to be added to Brainhack Proceeding 2023 by 15th May? Also, please don't forget to fill out your team member's details using this form: https://forms.gle/Ku3AVHcXvpUqVVkV7 . Cheers