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oncokb / oncokb-annotator

Annotates variants in MAF with OncoKB annotation.
GNU Affero General Public License v3.0
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Issues of completing the annotation #220

Open xiw588 opened 5 hours ago

xiw588 commented 5 hours ago

Hi, for some reason the annotation stopped without finishing the whole dataset. Any idea of why this is happening in API? Thanks!

zhx828 commented 5 hours ago

Hi, for some reason the annotation stopped without finishing the whole dataset. Any idea of why this is happening in API? Thanks!

How big the dataset is and how long did you run the script?

xiw588 commented 5 hours ago

Roughly 90000 rows and it stopped around 3 mins

zhx828 commented 4 hours ago

Roughly 90000 rows and it stopped around 3 mins

Would retry work? Did you see any exceptions?

xiw588 commented 4 hours ago

Just retried and it failed all the time, but stopped at different rows randomly....

xiw588 commented 1 hour ago

It worked! Thanks