Add Finch to AFproject.org

onecodex / finch-rs

A genomic minhashing implementation in Rust

https://www.onecodex.com

MIT License

92 stars 8 forks source link

Add Finch to AFproject.org #33

Open boasvdp opened 5 years ago

boasvdp commented 5 years ago

From their website: "AFproject is a free service for objective performance comparison of alignment-free sequence comparison tools on different datasets."

It is a live benchmarking effort with 12 data sets for benchmarking. Several tools have been added to the benchmark (mash, andi, phylonium etc.), and it might be very interesting to see how Finch compares on different data sets.

bovee commented 5 years ago

Thanks for creating this issue! I hadn't heard of this comparison page before. I'm curious what the results would be too (probably similar to mash since the algorithm is the same modulo filtering); I'll have to put together a submission when I have some free bandwidth.