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opain / GenoPred

Genotype-based Prediction (GenoPred)
https://opain.github.io/GenoPred/
GNU General Public License v3.0
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SBayesR always imputes N #108

Closed mja closed 4 months ago

mja commented 4 months ago

SBayesR script always inludes the --impute-n flag when running gctb, rather than setting it based on the script logic, in the string 

'--exclude-mhc --burn-in 2000 --impute-n --out-freq 1000 --out '
                              ^^^^^^^^^^

near the end of the line:

https://github.com/opain/GenoPred/blob/ef4e4b3faf4257ec44bfa8349d30eae9420f2542/Scripts/pgs_methods/sbayesr.R#L146

opain commented 4 months ago

Thanks for flagging Mark. I have just pushed a commit to the master branch that fixes it.