open2c / pairtools

Extract 3D contacts (.pairs) from sequencing alignments
MIT License
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Deduplication reporting update #187

Open agalitsyna opened 1 year ago

agalitsyna commented 1 year ago

Added --count-dups reporting mode for scipy and scikit-learn backends that report the number of duplicates (a little bit unfair, though, as the parent is counted there as well - it seems to make most of sense to report).

Phlya commented 10 months ago

Can you add tests for this feature?