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open2c
/
pairtools
Extract 3D contacts (.pairs) from sequencing alignments
MIT License
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'xcats' positional argument error in coverage_by_chrom
#197
laramiemckenna
opened
11 months ago
4
pairtools sort aborting with header error
#196
jctourtellotte
closed
11 months ago
3
make pairsio.py to read (and, in the future, write) .pairs files
#195
golobor
closed
8 months ago
2
Fix corrupt dedup output for inputs with quotes
#194
hkariti
closed
10 months ago
2
Parse2 clarification
#193
NMaziak
opened
11 months ago
0
Dedup runs forever
#192
mcahn
closed
1 year ago
31
pairtools parse divide by zero encountered
#191
magspho
closed
10 months ago
1
pairtools parse dedup cpu issues
#190
jiangshan529
closed
8 months ago
3
Update readthedocs.yml
#189
Phlya
closed
1 year ago
1
running pairtools merge sequentially produces circular dependencies
#188
jiangshan529
opened
1 year ago
1
Deduplication reporting update
#187
agalitsyna
opened
1 year ago
1
Dedup with UMIs
#186
gdolsten
closed
1 year ago
12
pairtools merge: "[E::bgzf_read_block] Failed to read BGZF block data at offset..." messages in stderr
#185
kalavattam
closed
1 year ago
3
Dedup dropping pairs
#184
nadabrovitxka
closed
1 year ago
7
Dedup parameters
#183
gdolsten
closed
1 year ago
4
pairtools split - float mapQ value
#182
nservant
opened
1 year ago
2
Question: Is it necessary to run `pairtools dedup` on merged file made from deduped pairs files?
#181
kalavattam
closed
1 year ago
2
parse - 90% of corrupt pair type
#180
nservant
closed
1 year ago
2
parse dedup getting killed by kernel.
#179
nikhilp11
closed
8 months ago
32
most pairs are classified as corrupt (XX)
#178
sahlenlab
closed
1 year ago
5
Pairtools dedup ValueError or incompatible reads?
#177
ddepierre
closed
1 year ago
4
parse2 option --report-position "junction" still reports the position with respect to "read"
#176
MasterChief1O7
closed
1 year ago
2
Pairtools for OmniC pipeline no longer working
#175
gdaviduu
closed
1 year ago
5
multiqc section of walkthrough
#174
gfudenberg
opened
1 year ago
1
Update mock.4flip.pairs
#173
muffato
opened
1 year ago
0
pairtools cov CLI
#172
agalitsyna
opened
1 year ago
0
Stats docs
#171
agalitsyna
closed
1 year ago
4
Upper bound on numpy version
#170
eharr
closed
8 months ago
3
Don't save index in scaling?
#169
Phlya
closed
8 months ago
1
Question about pairtools parse strand information
#167
jiangshan529
closed
1 year ago
1
P(s) convergence point in stats
#164
Phlya
opened
2 years ago
0
python API docs
#163
Phlya
opened
2 years ago
1
Allow column names in all dedup backends, and allow sorting by arbitrary columns
#162
Phlya
closed
8 months ago
44
Allow arbitrary columns in dedup
#161
Phlya
closed
8 months ago
1
Crashes on pairtools merge with latest version
#160
mblanche
closed
8 months ago
4
IndexError: pop index out of range for pairtools split
#159
KunFang93
closed
2 years ago
3
pairtools parsing engine abstraction
#156
agalitsyna
opened
2 years ago
1
Modified scaling.bins_pairs_by_distance to fix error thrown by narrow distance ranges.
#152
itsameerkat
closed
2 years ago
0
OSX support
#151
agalitsyna
opened
2 years ago
2
Error when computing scalings using a narrow distance range
#150
itsameerkat
closed
2 years ago
1
Fix hardcoded full path for pysam libs.
#149
ccoulombe
opened
2 years ago
2
Important fixes of splitting schema
#148
agalitsyna
closed
2 years ago
1
Error with pairtools 1.0.1
#147
mblanche
closed
2 years ago
8
ImportError: cannot import name 'dedup_cython' from partially initialized module 'pairtools.lib'
#146
georgette-femerling
closed
2 years ago
18
IndexError in pairtools split
#145
aminakur
closed
2 years ago
8
Change query to indexing
#144
Phlya
closed
2 years ago
2
Extension dtypes (e.g. pd.Int64) break .eval() and .query()
#143
Phlya
closed
2 years ago
1
Fix reading and summing files with chromsizes
#142
Phlya
closed
2 years ago
0
post-v1.0.0 proposals and issues (header post)
#139
agalitsyna
opened
2 years ago
0
stats: merge broken with yaml input
#137
Phlya
closed
2 years ago
3
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