opencobra / cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
https://opencobra.github.io/cobratoolbox
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Missing file in rBioNet #777

Closed fplanes closed 7 years ago

fplanes commented 7 years ago

We have tried to run the tutorial of rBioNet, but we found problems with the function rBioNetSettings.

The function requires a pre-existing rBioNetSettingsDB.mat file, which we have not found, neither in the tutorial folder nor in the source code folder.

Without rBioNetSettingsDB.mat file, we can not continue testing the tutorial.

I hereby confirm that I have:

(Note: You may replace [] with [X] to check the box)

laurentheirendt commented 7 years ago

cc: @stefaniamagg

stefaniamagg commented 7 years ago

I'll add a part that creates & deletes the file in the tutorial, this file sometimes causes issues when it's left in multiple places in the Matlab paths. I'll see if I can update rBioNet too to deal with this file.

laurentheirendt commented 7 years ago

Thanks @fplanes for reporting this and thanks @stefaniamagg for fixing this! 🎉